ruanjue/smartdenovo

Issues

• Minimum Read Length

  #62 opened 3 months ago by afazhra
  0

• cut_biedge_strgraph_core Undefined references

  #61 opened 10 months ago by zhizhi411
  1

• The assembly of genome is less than expect

  #60 opened a year ago by ala98412
  0

• smartdenovo make error

  #18 opened 7 years ago by liguiyang410
  8

• smartdenovo make error

  #59 opened 2 years ago by Bearmax90
  5

• make: *** [JBX.dmo.lay] Error 1

  #58 opened 2 years ago by zxgsy520
  1

• make: *** [pwk_genome.mak:27: pwk_genome.dmo.cns] Error 137

  #57 opened 2 years ago by dzh0220
  4

• The tool returned zero bytes of wtasm.dmo.cns.log, wtasm.dmo.cns, and wtasm.dmo.lay.utg

  #56 opened 3 years ago by ChooseelBunsuwansakul
  1

• Assembly summary

  #55 opened 3 years ago by LisSa13
  0

• Slurm exit code 2

  #54 opened 3 years ago by dagi34
  3

• Does smartdenovo apply to PacBio HiFi Reads?

  #53 opened 3 years ago by ZhangXuegrowup
  2

• Does it support multiple input files like input*.fa ?

  #52 opened 3 years ago by Ural-Yunusbaev
  1

• Resume

  #51 opened 4 years ago by ardy20
  1

• .gfa file produced

  #50 opened 4 years ago by ardy20
  1

• so looong!!

  #49 opened 4 years ago by julieaorjuela
  1

• how to adjusting parameters to improve the assembly result

  #48 opened 4 years ago by linshengnan2020
  3

• Compiation failed on "undefined reference to `cut_biedge_strgraph2'"

  #22 opened 6 years ago by yoann-dufresne
  6

• Assembly versus genome size

  #47 opened 4 years ago by ChuShin
  2

• prefix.dmo.lay.utg and contig.fasta

  #46 opened 4 years ago by pengbo233
  5

• aarch64 platform support

  #45 opened 5 years ago by darmac
  0

• Nanopore sequence commands

  #44 opened 5 years ago by bioramg
  5

• Does it support fa.gz as the input?

  #43 opened 5 years ago by X-WJ
  4

• Died at ./smartdenovo-master/smartdenovo.pl line 23.

  #42 opened 5 years ago by baizixiansheng
  6

• error while running smartdenovo

  #38 opened 5 years ago by tanu121093
  3

• the output file is null

  #39 opened 5 years ago by wuxiaopei0509
  1

• About meaning of -c parameter

  #41 opened 5 years ago by hungweichen0327
  2

• why is wtgbo skipped when using dmo overlapper in smartdenovo.pl?

  #40 opened 5 years ago by zhangrengang
  1

• polishing Smartdenovo assembly

  #37 opened 5 years ago by biowackysci
  1

• dmo.lay.

  #31 opened 6 years ago by Lutri22
  1

• [SMDS849.dmo.ovl] Bus error (core dumped)

  #16 opened 6 years ago by HTaekOppa
  18

• Discrepancies genome size

  #36 opened 6 years ago by begsch
  4

• installation error

  #35 opened 6 years ago by madhubioinfo
  7

• failed to `make wtcorr `

  #32 opened 6 years ago by zhangrengang
  1

• Should nanopores reads be corrected by canu or other corrector before using smartdenovo

  #34 opened 6 years ago by ncgrjsmiao
  1

• It would be good to have an actual release of this.

  #30 opened 6 years ago by akesandgren
  2

• How to run wtzmo parallelly

  #33 opened 6 years ago by Jolvii85
  3

• PacBio and Nanopore Hybrid Assembly

  #29 opened 6 years ago by biowackysci
  0

• wtpoa-cns bam correction stage segmentation fault

  #28 opened 6 years ago by yuwwu
  1

• separating similar chromosome parts in corrected read assemblies

  #27 opened 6 years ago by chklopp
  1

• How does a SMARTdenovo output file look like

  #26 opened 6 years ago by biowackysci
  2

• wtzmo中的参数

  #25 opened 6 years ago by AmicPair
  1

• chloroplast genome totally lost

  #24 opened 6 years ago by njaupan
  2

• SMARTdenovo failure

  #23 opened 6 years ago by gabster
  8

• Kmer selection

  #21 opened 7 years ago by njaupan
  1

• Compilation error

  #17 opened 7 years ago by yjx1217
  14

• missing one entire chromosome in the final assembly

  #19 opened 7 years ago by yjx1217
  4

• output fastq from wtcns

  #20 opened 7 years ago by njaupan
  1

• Performance improvement

  #15 opened 7 years ago by tangerzhang
  4

• Final Assembly File (*.cns) is not generated

  #14 opened 7 years ago by VivekTodur
  1

• No .cns file

  #13 opened 7 years ago by HTaekOppa
  1