Pinned Repositories
ABHgenotypeR
The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes
Accessing_public_genomic_data
Tutorials on accessing public reference and genomic data
ADDIT
Imputation tool for missing genotype data in model and non-model species
AdmixTools
Tools test whether admixture occurred and more
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
agricolaeplotr
A repository for agricolaeplotr package
CC2023-QG
Practical on quantitative genetics
crispr-dav
CRISPR NGS data analysis and visualization pipeline
cutadapt
cutadapt removes adapter sequences from sequencing reads
ruixiangliu's Repositories
ruixiangliu/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
ruixiangliu/BrAPI
Repository for version control of the BrAPI specifications
ruixiangliu/germinate-vue
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
ruixiangliu/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
ruixiangliu/PhenoLib
ruixiangliu/Prospector
ruixiangliu/htp
Haplotype-tag polymorphisms
ruixiangliu/Intercross
ruixiangliu/OneKK
ruixiangliu/trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
ruixiangliu/bedtools2
bedtools - the swiss army knife for genome arithmetic
ruixiangliu/EDTA
Extensive de-novo TE Annotator
ruixiangliu/maize_genomic_ecosystem
ruixiangliu/qtl2ggplot
Extension of R/qtl2plot to ggplot2
ruixiangliu/SoMeSci
Software Mentions in Science articles
ruixiangliu/REKCARC-TSC-UHT
清华大学计算机系课程攻略 Guidance for courses in Department of Computer Science and Technology, Tsinghua University
ruixiangliu/zju-icicles
浙江大学课程攻略共享计划
ruixiangliu/libpku
贵校课程资料民间整理
ruixiangliu/TensorFlow-Examples
TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)
ruixiangliu/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
ruixiangliu/SIMER
Data Simulation for Life Science and Breeding
ruixiangliu/GMAT
ruixiangliu/VariantSpark
machine learning for genomic variants
ruixiangliu/CropGBM
ruixiangliu/MODAS
MODAS: Multi-Omics Data Association Study toolkit
ruixiangliu/maize_TEs
TE annotations for multiple maize genomes
ruixiangliu/schnablelab
collect genotype imputation, GWAS, image processing, and machine learning related scripts
ruixiangliu/mummer
Mummer alignment tool
ruixiangliu/GOVS
Genome optimization via virtual simulation
ruixiangliu/StatsWithJuliaBook