Pinned Repositories
ABHgenotypeR
The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes
Accessing_public_genomic_data
Tutorials on accessing public reference and genomic data
ADDIT
Imputation tool for missing genotype data in model and non-model species
AdmixTools
Tools test whether admixture occurred and more
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
agricolaeplotr
A repository for agricolaeplotr package
CC2023-QG
Practical on quantitative genetics
crispr-dav
CRISPR NGS data analysis and visualization pipeline
cutadapt
cutadapt removes adapter sequences from sequencing reads
ruixiangliu's Repositories
ruixiangliu/PythonDataScienceHandbook
Jupyter Notebooks for the Python Data Science Handbook
ruixiangliu/AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
ruixiangliu/GBSFilteR
R scripts to filter Genotyping by Sequencing data from the TASSEL pipeline
ruixiangliu/xsede-bioinformatics-workbook
ruixiangliu/seqtk
Toolkit for processing sequences in FASTA/Q formats
ruixiangliu/GEN242-2016
Data Analysis in Genome Biology
ruixiangliu/galaxy-pcr-markers
Scripts for design of PCR-based Marker Assays from DNA sequence variant data, plus Galaxy xml files
ruixiangliu/CViT
The Chromosome Visualization Tool - Perl version
ruixiangliu/CIDR-examples
Examples relating to the CIDR package.
ruixiangliu/BCB546-R-Exercise
ruixiangliu/new_marker
ruixiangliu/UNIX_Assignment
BCB546X UNIX_Assignment files
ruixiangliu/DataOrg
ruixiangliu/R-Data-Skill
Learn R
ruixiangliu/BCB546X_2016Spring
ruixiangliu/ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
ruixiangliu/aSPU_py
python version of MTaSPUsSet test (Multiple-trait, gene-level adaptive association testing with GWAS summary statistics)
ruixiangliu/pylmm
A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.
ruixiangliu/trimmomatic
Read trimming tool for Illumina NGS data.
ruixiangliu/linkage_map
map_map
ruixiangliu/rep-res-course
Materials for a class on reproducible research with R, Rstudio, and GitHub
ruixiangliu/Paper_FunQTL
Source for paper, "A simple regression-based method to map quantitative trait loci underlying function-valued phenotypes"
ruixiangliu/stat540-2014-attali-dean
Lab work for UBC STAT540
ruixiangliu/zmays_germinate
Download and create local Zea mays resouces