ruixiangliu

PhD

ISU/JAASAmes

Pinned Repositories

ABHgenotypeR
The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes
Language:R0 0 00
Accessing_public_genomic_data
Tutorials on accessing public reference and genomic data
Language:HTML0 0 00
ADDIT
Imputation tool for missing genotype data in model and non-model species
Language:Python0 0 00
AdmixTools
Tools test whether admixture occurred and more
Language:C0 0 00
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Language:Python00
agricolaeplotr
A repository for agricolaeplotr package
Language:R00
CC2023-QG
Practical on quantitative genetics
Language:HTML1 0 00
crispr-dav
CRISPR NGS data analysis and visualization pipeline
Language:Perl1 0 00
cutadapt
cutadapt removes adapter sequences from sequencing reads
Language:Python1 1 00

ruixiangliu's Repositories

ruixiangliu/popgen-notes
Population genetics notes
Language:PostScript
ruixiangliu/R-for-Plant-Breeding
R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations
ruixiangliu/zrender
A lightweight canvas library which providing 2d draw for ECharts
Language:JavaScript
ruixiangliu/LinkageMapView
Plot Linkage Group Maps with QTLs
Language:R
ruixiangliu/annotate_tir
find terminal inverted repeats (TIRs)
ruixiangliu/Accessing_public_genomic_data
Tutorials on accessing public reference and genomic data
Language:HTML
ruixiangliu/tl
tldr for R!
Language:R
ruixiangliu/IBCF.MTME
Item Based Collaborative Filtering For Multi-trait and Multi-environment Data [R Package - dev version]
Language:R
ruixiangliu/CountClust
A R package for Grade of Membership model and Visualization of counts data:
Language:R
ruixiangliu/StatisticalMethodsforOmicsAssistedBreeding
Slides for short course on 'omics assisted breeding methods
Language:HTML
ruixiangliu/UT2018
Statistical Methods for Omics-assisted Breeding Hands-on Workshop
Language:HTML
ruixiangliu/mapview
Interactive viewing of spatial data in R
Language:R
ruixiangliu/sbl
An R package for QTL mapping and GWAS
ruixiangliu/SWIFr
Sweep Inference Framework (controlling for correlation)
Language:OpenEdge ABL
ruixiangliu/learning_vcf_file
Learning the Variant Call Format
Language:Perl1
ruixiangliu/Intro-to-Unix-QMB
Workshop for Intro to Unix
Language:Shell
ruixiangliu/vartrix
Single-Cell Genotyping Tool
Language:Rust
ruixiangliu/patchwork
The Composer of ggplots
Language:R
ruixiangliu/Field-Book
Field Book
Language:Java
ruixiangliu/py4lifesci
Python for the Life Sciences code repository
Language:Python
ruixiangliu/Hapi
Chromosome-length haplotype inference using genotype data of single gamete cells
ruixiangliu/GCC-BOSC-2018
Lessons for "Setting up for Success when planning an RNA-seq experiment" session at GCC-BOSC 2018
Language:HTML
ruixiangliu/rnaseq_overview
Short course describing the considerations for a successful RNA-seq experiment
Language:HTML
ruixiangliu/Genotype-corrector
A useful tool to correct genotype calls for individuals in the RILs with the goal to improve genetic mapping
Language:Python
ruixiangliu/ABHgenotypeR
The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes
Language:R
ruixiangliu/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
ruixiangliu/Intro-to-rnaseq-hpc-gt
Introduction to RNA-seq using HPC
Language:Shell
ruixiangliu/TSP
Traveling Salesperson Problem - R package
Language:R
ruixiangliu/docfetcher
docfetcher with new features
ruixiangliu/ThermoAlign
ThermoAlign: software for automated primer design
Language:Python