Pinned Repositories
ABHgenotypeR
The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes
Accessing_public_genomic_data
Tutorials on accessing public reference and genomic data
ADDIT
Imputation tool for missing genotype data in model and non-model species
AdmixTools
Tools test whether admixture occurred and more
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
agricolaeplotr
A repository for agricolaeplotr package
CC2023-QG
Practical on quantitative genetics
crispr-dav
CRISPR NGS data analysis and visualization pipeline
cutadapt
cutadapt removes adapter sequences from sequencing reads
ruixiangliu's Repositories
ruixiangliu/BGData
A Suite of Packages for Analysis of Big Genomic Data
ruixiangliu/conos
Clustering on Network of Samples
ruixiangliu/CRISPR-Local
A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.
ruixiangliu/curlywhirly
CurlyWhirly is an application for viewing multi-dimensional data, with a particular focus on the outputs of Principle Coordinate Analysis and Principal Components Analysis.
ruixiangliu/cvitjs
CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.
ruixiangliu/data_to_viz
Leading to the dataviz you need
ruixiangliu/datapasta
On top of spaghetti, all covered in cheese....
ruixiangliu/gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
ruixiangliu/ggplot2-book
ggplot2: elegant graphics for data analysis
ruixiangliu/helium-docs
Documentation for the Helium pedigree visualization software
ruixiangliu/hpcc_modules
Modules for describing software environment on biocluster
ruixiangliu/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
ruixiangliu/Intro-to-ChIPseq
Intro to ChIPseq using HPC
ruixiangliu/Inventory
ruixiangliu/Maize_NC358
The repository for codes developed to generated the Maize NC358 assemblies and analyses.
ruixiangliu/maizeTE_variation
Additional files related to Anderson et al. 2019
ruixiangliu/PlantsAndPython
Course material for the Foundation in Computational Plant Science course at Michigan State University
ruixiangliu/PlotsOfData
Shiny App for comparison of samples
ruixiangliu/predhy
Genomic Prediction of Hybrid Performance
ruixiangliu/pyseqlogo
Python package to plot sequence logos
ruixiangliu/pysradb
Package for fetching metadata and downloading data from SRA
ruixiangliu/R-graph-gallery
A website that displays hundreds of R charts
ruixiangliu/rtm-gwas
An innovative GWAS procedure for studies on germplasm population and plant breeding
ruixiangliu/SNP_Primer_Pipeline
ruixiangliu/Statistical-Learning-Method_Code
手写实现李航《统计学习方法》书中全部算法
ruixiangliu/tidytuesday
Code snippets for weekly #tidytuesday project
ruixiangliu/tidytuesday-1
Official repo for the #tidytuesday project
ruixiangliu/TIR-Learner-Rice
Modified TIR-Learner for Rice genome
ruixiangliu/VCF-kit
VCF-kit: Assorted utilities for the variant call format
ruixiangliu/zippy
Zippy - Batch primer design tool and database