Pinned Repositories
ABHgenotypeR
The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes
Accessing_public_genomic_data
Tutorials on accessing public reference and genomic data
ADDIT
Imputation tool for missing genotype data in model and non-model species
AdmixTools
Tools test whether admixture occurred and more
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
agricolaeplotr
A repository for agricolaeplotr package
CC2023-QG
Practical on quantitative genetics
crispr-dav
CRISPR NGS data analysis and visualization pipeline
cutadapt
cutadapt removes adapter sequences from sequencing reads
ruixiangliu's Repositories
ruixiangliu/bioinformatics
tools for biolinux
ruixiangliu/maize_v4_TE_annotation
scripts and intermediate files used to annotate TEs in Jiao et al.
ruixiangliu/GenotypeProcessing
Routine processing for genotype data towards ADMIXTURE and/or imputation
ruixiangliu/FarmCPUpp
Perform GWAS using the FarmCPU model.
ruixiangliu/qtl2
QTL analysis software for high-dimensional data and complex cross designs
ruixiangliu/Landscape_Genetics_R_Course
Swirl course on landscape genetic data analysis with R
ruixiangliu/QTLseqr
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
ruixiangliu/stat892-2018
STAT 892-004 Integrative Data Science for Plant Phenomics - Spring 2018
ruixiangliu/dataviz
A book covering the fundamentals of data visualization
ruixiangliu/The-Python-Graph-Gallery
A website displaying hundreds of charts made with Python
ruixiangliu/PQHE
Pooled QTL Heritability Estimator (PQHE) is a method to estimate QTL heritability using pooled sequencing data obtained under different experimental designs.
ruixiangliu/Pandas-Cookbook
Pandas Cookbook, published by Packt
ruixiangliu/biolfs
biolfs builder for centos
ruixiangliu/RgeneticMap
Draw genetic map (linkage map) in R
ruixiangliu/NetMiner
A pipeline for high-confidence RNA-seq gene co-expression network inference
ruixiangliu/ADDIT
Imputation tool for missing genotype data in model and non-model species
ruixiangliu/crispr-dav
CRISPR NGS data analysis and visualization pipeline
ruixiangliu/standard-RAxML
ruixiangliu/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
ruixiangliu/somaticseq
An ensemble approach to accurately detect somatic mutations using SomaticSeq
ruixiangliu/recount
R package for the recount2 project
ruixiangliu/ondex-knet-builder
ONDEX Components used to build KNet Projects.
ruixiangliu/SO-Ontologies
Collect of SO Ontologies
ruixiangliu/h5
Interface to the HDF5 Library
ruixiangliu/cytofWorkflow.BioC2017workshop
ruixiangliu/PhenoSpD
ruixiangliu/squid
ruixiangliu/circlize
Circular visualization in R
ruixiangliu/lantern
🔴Lantern Latest Download https://github.com/getlantern/lantern/releases/tag/latest 🔴蓝灯最新版本下载 https://github.com/getlantern/forum/issues/833 🔴
ruixiangliu/cutadapt
cutadapt removes adapter sequences from sequencing reads