ruy204

ruy204's Stars

• state-spaces/mamba

  Mamba SSM architecture

  Language:Python14.2k1046231.2k

• google-deepmind/deepmind-research

  This repository contains implementations and illustrative code to accompany DeepMind publications

  Language:Jupyter Notebook13.6k3273292.6k

• Diego999/pyGAT

  Pytorch implementation of the Graph Attention Network model by Veličković et. al (2017, https://arxiv.org/abs/1710.10903)

  Language:Python3k1672694

• huawei-noah/trustworthyAI

  Trustworthy AI related projects

  Language:Python1k21109229

• YannDubs/disentangling-vae

  Experiments for understanding disentanglement in VAE latent representations

  Language:Python8081424145

• tensorflow/tcav

  Code for the TCAV ML interpretability project

  Language:Jupyter Notebook6343364151

• mdozmorov/HiC_tools

  A collection of tools for Hi-C data analysis

  570386127

• lucidrains/enformer-pytorch

  Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

  Language:Python464163987

• ENCODE-DCC/chip-seq-pipeline2

  ENCODE ChIP-seq pipeline

  Language:Python25924178120

• Adamdad/DeRy

  [NeurIPS2022] Deep Model Reassembly

  Language:Python2542911

• Wangt-CN/Awesome-Causality-in-CV

  A curated list of Causality in Computer Vision

  2401519

• yoyolicoris/pytorch-NMF

  A pytorch package for non-negative matrix factorization.

  Language:Python23761623

• GangCaoLab/CoolBox

  Jupyter notebook based genomic data visualization toolkit.

  Language:Python23348437

• cemoody/simple_mf

  Simple but Flexible Recommendation Engine in PyTorch

  Language:Jupyter Notebook1328544

• FunctionLab/sei-framework

  code to run sei and obtain sei and sequence class predictions

  Language:Python988286

• hbctraining/Intro-to-ChIPseq-flipped

  Language:HTML8584137

• jzhoulab/orca

  sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale

  Language:Python823621

• mdozmorov/scHiC_notes

  Notes on single-cell Hi-C technologies, tools, and data

  76319

• snehamitra/SCARlink

  Language:Jupyter Notebook501228

• ernstlab/full_stack_ChromHMM_annotations

  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes

  Language:Python32431

• Qualcomm-AI-research/weakly-supervised-causal-representation-learning

  Language:Python28428

• STIMALiU/ml-reading-group

  Information and organization of the STIMA Machine Learning Reading Group

  241312

• KChen-lab/Cyclum

  Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations

  Language:Python22144

• FunctionLab/sei-manuscript

  Code for reproducing the Sei manuscript results

  Language:Jupyter Notebook16753

• EngreitzLab/CRISPR_comparison

  Snakemake workflow for comparing E-G links to experimental data

  Language:R13512

• arnavmdas/epiphany

  Language:Jupyter Notebook10262

• tanaylab/schic2

  Language:R10422

• WLYLab/DeepBIO

  Language:Python9003

• DanuserLab/u-infotrace

  Compute causal relationships between individual pixels in 2D videos over space and time to reveal salient dynamics using a variety of causal measures

  Language:Python8201

• khj3017/schic-topic-model

  Language:R5150