ryuzheng

ryuzheng's Stars

• ShiArthur03/ShiArthur03

  Language:MATLAB10.4k321.4k1.9k

• wandb/wandb

  The AI developer platform. Use Weights & Biases to train and fine-tune models, and manage models from experimentation to production.

  Language:Python9.2k613.4k675

• l0o0/jasminum

  A Zotero add-on to retrive CNKI meta data. 一个简单的Zotero 插件，用于识别中文元数据

  Language:TypeScript5.6k30299287

• MuiseDestiny/zotero-gpt

  GPT Meet Zotero.

  Language:TypeScript5.3k12305214

• eweitz/ideogram

  Chromosome visualization for the web

  Language:JavaScript2942211671

• shawn-bluce/eat

  I'm a CPU and memory eating monster. 一个吃 CPU 内存的怪兽。

  Language:Go2771116

• showteeth/ggcoverage

  Visualize and annotate genomic coverage with ggplot2

  Language:R22753320

• chrisamiller/fishplot

  Create timecourse "fish plots" that show changes in the clonal architecture of tumors

  Language:R165113846

• AntonioDeFalco/SCEVAN

  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

  Language:HTML93412524

• harbourlab/uphyloplot2

  Draw phylogenetic trees of tumor evolution

  Language:Python6902124

• shendurelab/cfDNA

  Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA

  Language:Python6213730

• AlexandrovLab/SigProfilerAssignment

  Assignment of known mutational signatures to individual samples and individual somatic mutations

  Language:Python4737110

• cancerit/alleleCount

  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)

  Language:C4317458

• yuchaojiang/CODEX2

  Full-spectrum copy number variation detection by high-throughput DNA sequencing

  Language:R37103712

• JiguangPeng/autopvs1

  An automatic classification tool for PVS1 interpretation of null variants

  Language:Python3561217

• Niinleslie/MesKit

  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations

  Language:R354219

• hms-dbmi/dseqr

  single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.

  Language:R2081674

• freestatman/ideogRam

  R htmlwidget package for ideogram.js

  Language:R165104

• raphael-group/calder

  CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk DNA sequencing data

  Language:Java1511141

• ciceklab/DECoNT

  Exome Copy Number Variation Polisher via Deep Learning

  Language:Python14202

• yoyoong/mHapSuite

  Language:Java12131

• CCCKW/mHapTk

  Language:Python10031

• qingjian1991/MPTevol

  Language:R10232

• jpuntomarcos/CNVfilteR

  R package to remove false positives of CNV calling tools by using SNV calls

  Language:R51111

• AnetaMikulasova/CNVRobot

  CNVRobot is an integrated pipeline for CNVs detection from short-read DNA sequencing data.

  Language:Shell3

• bioinformatics-xu/DriverGenePathway

  Identify Driver Genes and Driver Pathways in Cancer based on MutSigCV and Statistical methods

  Language:R35

• Rajaram-Lab/cancres-2022-intratumoral-heterogeneity-dl-paper

  Language:Jupyter Notebook3202

• sqyu/CorDiffViz

  Visualization for Differential Correlation Matrices

  Language:R2302

• yali-bai/CabernetMethylPip

  Language:Python20

• adamallo/MITHE

  Multisample IntraTumor Heterogeneity Estimator

  Language:Perl1200