saezlab/OmnipathR

https://omnipathdb.org/ - 500 Internal Server Error

georgia-katsoula opened this issue · 2 comments

georgia-katsoula commented

Hi,

thank you for developing Omnipath, I have been trying to retrieve interaction data from the https://omnipathdb.org using the function import_ligrecextra_interactions().

However, I get the error:
Error in open.connection(structure(9L, class = c("curl", "connection"), conn_id = <pointer: 0xabd>), : HTTP error 500..

I checked further if I can download the data from the link:
https://omnipathdb.org/interactions?genesymbols=yes&datasets=ligrecextra&organisms=9606&fields=sources,references,curation_effort&license=academic but no link to https://omnipathdb.org/ is currently working for me and I get 500 Internal Server Error.

Thank you in advance for looking into it (@deeenes) :).

Best wishes,
Georgia

georgia-katsoula commented

Thank you, it works fine for me now.

Best,
Georgia

deeenes commented

Hi Georgia,

I think that day I've done a 1-2 hours maintenance, and you tried to use it exactly that time.

Best,

Denes

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