sagesteppe
I use data science to make scientifically informed land management decisions by synthesizing field surveys, remote sensing, museums specimens, & genetics data.
Chicago Botanic GardenWestern North America and Chicago
Pinned Repositories
AIM_Field
tools for UFO terrestrial AIM
AIM_interpretation
References, and code backgrounds for interpreting 5 year AIM monitoring summaries.
AIMnalysis
Functions for Assessment, Inventory, and Analysis field work, yearly reporting, and analysis of a panel.
Analytical_Toolkit_SDM
This repository contains the data, functions, scripts, and presentation for the guest lecture in the Analytical Toolbox Class at Northwestern University 2022.
Augspurger_Synchrony
A single function to calculate Augspurgers index of synchrony after Primack 1980
AugspurgerIndex
Calculate Augspurgers Index of Synchrony
Barneby_Lives_dev
Tools for collecting digital data on herbarium specimens
BarnebyLives
Tools for collecting digital data on herbarium specimens.
CLM_2024_Veg_Ecology
Code for presentation, data analysis, and visualization for afternoon Vegetation Ecology session for 2024 CLM interns.
Spatial_Data_Science_R
R4DS Spatial Lecture materials for Northwestern University
sagesteppe's Repositories
sagesteppe/AIMnalysis
Functions for Assessment, Inventory, and Analysis field work, yearly reporting, and analysis of a panel.
sagesteppe/Augspurger_Synchrony
A single function to calculate Augspurgers index of synchrony after Primack 1980
sagesteppe/AugspurgerIndex
Calculate Augspurgers Index of Synchrony
sagesteppe/Barneby_Lives_dev
Tools for collecting digital data on herbarium specimens
sagesteppe/BarnebyLives
Tools for collecting digital data on herbarium specimens.
sagesteppe/CLM_2024_Veg_Ecology
Code for presentation, data analysis, and visualization for afternoon Vegetation Ecology session for 2024 CLM interns.
sagesteppe/getGridmet
download gridmet data to a computer near you
sagesteppe/Ecoloradense
Analysis for assessing whether this taxon merits continued taxonomic recognition
sagesteppe/EmpiricalSeedZones
An attempt to consolidate the existing Western Empirical Seedzones and standardize them.
sagesteppe/eSTZwritR
A simple package for documenting and sharing empirical Seed Transfer Zones (STZs)
sagesteppe/FloraGunnisonRiverBasin
An attempt to generate a floristic inventory of the entire Gunnison River Basin in Western Colorado.
sagesteppe/ggplot2
An implementation of the Grammar of Graphics in R
sagesteppe/ManuSCript
Writing my masters thesis for submission to Methods in Ecology and Evolution
sagesteppe/Nest-Cells-Leaves-ID
scripts for leaf measurements and original field and herbarium.
sagesteppe/nothingButNet
Helper functions for creating more informative, and visually appealing, circular networks using iGraph. These functions wrap up into a single big function for drawing many networks to arrange in a grid.
sagesteppe/phycharts
Create a phylogenetically informed pie chart to display relationships within a sampling schema
sagesteppe/QGIS_Lesson
This repository contains contents for teaching SoS crews how to set up and interact with the open source, lightweight, and efficient geographic information system (GIS) QGIS.
sagesteppe/safeHavens
sagesteppe/sagesteppe.github.io
Reed Benkendorfs research website
sagesteppe/SDM_restorations
Using Species Distribution Modelling and connectivity analysis to inform restoration germplasm developement endeavors in Western North America.
sagesteppe/SDMS_RMBL
sagesteppe/SeedCollectionSize
Tools for estimating the mass required to achieve an operational Seeds of Success collection.
sagesteppe/SeedPhenology
Estimating the initiation of flower, peak flower, fruit maturation, and fruit dispersal using herbarium specimens to inform wildland seed collection in the Western United States.
sagesteppe/SoS_GB
Scripts for informed scouting of native populations for restoration
sagesteppe/SoS_GB_EcoRegion_Species_Talk
One hour talk for Seeds of Success Great Basin Ecoregional Training
sagesteppe/StrategizingGermplasmCollections
Theoretical approaches for spatial sampling of plant species to ensure conservation of adequate amounts of genetic diversity.
sagesteppe/UFO_AIM_Panel1_Final_Report
This repository contains the code to assemble all Chapters of the AIM project into a final document. It also contains a loose guide to the R scripts and data we used for ths project.
sagesteppe/UFO_Plant_Diversity
Scripts for estimating natural variation of Plant Diversity, mostly alpha - species richness, from Ecological Sites
sagesteppe/UFO_Soil_Stability
Analysing soil surface pedon stability, and contextualizing information regarding canopy cover and biocrusts
sagesteppe/usfs_talk
Making slides, mostly maps, for Seeds of Success talk for the CBG USFS interns 2023