samtools/htsjdk

EdgeReadIterator (used in Picard's CollectWgsMetrics) doesn't handle intervals correctly

michaelgatzen opened this issue · 2 comments

When running Picard's CollectWgsMetrics with an IntervalList, only the start and end coordinates of the first interval in that list are considered. This can be traced back to a bug in EdgeReadIterator and AbstractLocusInfo.

I can't assign this to myself because I'm not a contributor, but I'm working on this issue.

closed by #1616