sanger-pathogens/seroba

Issues

• There is not detailed_serogroup_info in the output folder

  #79 opened 3 months ago by juanjo255
  2

• Error on database

  #80 opened 3 months ago by portillanath
  1

• Names for forwards and reverse reads does not match. Cannot continue

  #42 opened 6 years ago by tseemann
  10

• errors during installation via conda/mamba

  #78 opened a year ago by ulrichmarkus
  2

• Run Seroba with PneumoCat v1.2.1??

  #77 opened a year ago by arif-tanmoy
  2

• Swiss_NT

  #72 opened 2 years ago by tauqeer9
  1

• Names for forwards and reverse reads does not match. Cannot continue

  #69 opened 2 years ago by kdyoung100
  1

• TypeError: argument of type 'NoneType' is not iterable

  #73 opened a year ago by HarryHung
  5

• Job runs for 17+ hours without completion

  #70 opened 2 years ago by emmadoughty
  0

• serotyping from assemblies as input

  #65 opened 3 years ago by abrozzi
  3

• Can't build the ariba database

  #60 opened 2 years ago by wmiellet
  1

• Error:

  #67 opened 2 years ago by lexleong
  1

• Conda install 'createDBs' and 'getPneumocat' errors

  #63 opened 3 years ago by rpetit3
  1

• Seroba test error while installed with conda

  #66 opened 3 years ago by sreerampeela
  0

• Hi..any suggestions on how this error was resolved for you?

  #64 opened 3 years ago by sreerampeela
  1

• Got an error massage through docker with Ubuntu20.04 LTS

  #58 opened 4 years ago by snakano0527
  1

• Default for runSerotyping coverage not being set correctly

  #57 opened 4 years ago by AdmiralenOla
  1

• Dependencies issues when using seroba through conda

  #61 opened 4 years ago by AleSR13
  7

• latest build on docker hub is non functional

  #62 opened 3 years ago by cimendes
  0

• biopython issue!

  #59 opened 4 years ago by bhclement
  0

• gzip: No such file or directory

  #54 opened 4 years ago by km-bit
  3

• 11A/11C Misidentification

  #55 opened 4 years ago by garfinjm
  4

• KeyError:'24B'

  #53 opened 4 years ago by km-bit
  3

• nucmer dependency error

  #46 opened 4 years ago by jacorvar
  1

• The "cd_cluster.tsv" created recently is different from the previous one

  #47 opened 4 years ago by abcdtree
  4

• Make a git tag for 1.0.2 ?

  #50 opened 4 years ago by tseemann
  2

• Typo in docs

  #51 opened 5 years ago by tseemann
  0

• "Bash Run_nucmer.sh" Error

  #48 opened 5 years ago by abcdtree
  3

• Can't build DB? False | ariba prepare_ref | no such file

  #37 opened 6 years ago by tseemann
  4

• seroba stopping signal recieved 28

  #45 opened 5 years ago by varunshamanna
  3

• After kmc, error "Stopping! Signal received: 13"

  #43 opened 6 years ago by tseemann
  2

• No detailed output file

  #44 opened 5 years ago by andersgs
  2

• YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated,

  #36 opened 6 years ago by tseemann
  0

• error

  #35 opened 6 years ago by bhclement
  1

• install from source

  #34 opened 6 years ago by jacorvar
  1

• Empty summary.tsv file

  #33 opened 6 years ago by pneumowidow
  2

• pkg_resources.ResolutionError: No script named 'seroba'

  #22 opened 7 years ago by tseemann
  3

• AttributeError: 'Namespace' object has no attribute 'database_dir'

  #14 opened 7 years ago by tseemann
  3

• Readme mentions SVN on a git database

  #20 opened 7 years ago by andrewjpage
  0

• provide a pip3 install https:// install line

  #13 opened 7 years ago by tseemann
  2

• Dodgy readme formatting

  #12 opened 7 years ago by tseemann
  0