sarahalamdari

sarahalamdari's Stars

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13.1k2288702.3k

• microsoft/Graphormer

  Graphormer is a general-purpose deep learning backbone for molecular modeling.

  Language:Python2.2k31156343

• microsoft/evodiff

  Generation of protein sequences and evolutionary alignments via discrete diffusion models

  Language:Python545154078

• microsoft/foldingdiff

  Diffusion models of protein structure; trigonometry and attention are all you need!

  Language:Jupyter Notebook527201961

• haddocking/pdb-tools

  A dependency-free cross-platform swiss army knife for PDB files.

  Language:Python3931473114

• MinkaiXu/GeoDiff

  Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).

  Language:Python33863173

• microsoft/protein-sequence-models

  Language:Python233141827

• soedinglab/CCMpred

  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.

  Language:C107133527

• J-SNACKKB/FLIP

  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

  Language:Jupyter Notebook9571114

• oriondollar/TransVAE

  A Transformer Based VAE Architecture for De Novo Molecular Design

  Language:Jupyter Notebook932725

• Rostlab/goPredSim

  Language:Python441164

• microsoft/protnote

  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function prediction

  Language:Jupyter Notebook31652

• tiwarylab/DDPM_REMD

  Denoising diffusion probabilistic models for replica exchange

  Language:Jupyter Notebook21104