sbooeshaghi
I develop single-cell genomics technologies, have a B.S. degree from MIT in ME & Math, and enjoy drinking tea and riding bikes.
Pinned Repositories
bustools
Tools for working with BUS files
colosseum
colosseum system - open source fraction collector for laboratories
ffq
A tool to find sequencing data and metadata from public databases.
kallisto
Near-optimal RNA-Seq quantification
poseidon
poseidon system - open source syringe pumps and microscope for laboratories
seqspec
machine-readable file format for genomic library sequence and structure
browser-serial
API for communicating with serial ports in the browser. Uses the experimental serial API https://wicg.github.io/serial/
parlertrick
datamining the parler datadump
SBA-PPP-Loan-Data
SBA Paycheck Protection Program Loan Level Data from https://home.treasury.gov/policy-issues/cares-act/assistance-for-small-businesses/sba-paycheck-protection-program-loan-level-data
single-cell-vocabulary
sbooeshaghi's Repositories
sbooeshaghi/single-cell-vocabulary
sbooeshaghi/parlertrick
datamining the parler datadump
sbooeshaghi/browser-serial
API for communicating with serial ports in the browser. Uses the experimental serial API https://wicg.github.io/serial/
sbooeshaghi/picasso
sbooeshaghi/spaceranger
10x genomics spatial genomics software
sbooeshaghi/adcellcell
sbooeshaghi/azucar
sbooeshaghi/bytesizebio
sbooeshaghi/COVID19-County
COVID-19 data from LA County
sbooeshaghi/fetchfastq
Pipeline to fetch metadata and raw FastQ files from public databases
sbooeshaghi/ffq
A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.
sbooeshaghi/fluvax
historical data on flu vaccine distribution
sbooeshaghi/gget
š§¬ gget enables efficient querying of genomic reference databases to support the analysis of sequencing data.
sbooeshaghi/groupmeeting
sbooeshaghi/health-insurance
sbooeshaghi/jupytext
Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts
sbooeshaghi/MBGBLHGP_2019
Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
sbooeshaghi/ngs-tools
Reusable tools for working with next-generation sequencing (NGS) data
sbooeshaghi/NRadixTree
A radix tree in C#
sbooeshaghi/pySCTransform
sbooeshaghi/sbooeshaghi
sbooeshaghi/sbooeshaghi.github.io
sbooeshaghi/seq.run
simple utility to estimate the size of FASTQ files on disk
sbooeshaghi/seqspec-builder
sbooeshaghi/seurat
R toolkit for single cell genomics
sbooeshaghi/sim
a collection of splatter simulations for use in various projects
sbooeshaghi/teawithteachers
sbooeshaghi/tools
a collection of tools I have made
sbooeshaghi/transcriptomics-studies-over-time
Automatically generates plots showing the increase in studies using transcriptomics technologies over time.
sbooeshaghi/twitter-together
:bird: A GitHub action to tweet from a repository