pachterlab/ffq

Issues

• add CRX accession parsing

  #72 opened 3 months ago by sbooeshaghi
  2

• sample search gets NoneType' object has no attribute 'text'

  #73 opened 4 months ago by diekhans
  2

• ffq

  #64 opened 10 months ago by BaHole
  3

• biosample error

  #48 opened 2 years ago by PAMorin
  3

• access original uploaded bam files from SRA?

  #71 opened 7 months ago by whtns
  1

• ERROR 'str' object has no attribute 'copy'

  #70 opened 7 months ago by holmrenser
  2

• How to Download Files Requiring a Key with prefetch

  #68 opened 8 months ago by Lin-zikai
  1

• ffq --ftp file not found

  #69 opened 9 months ago by hariesramdhani
  2

• ffq not working anymore (ffq: error)

  #67 opened 10 months ago by rderelle
  2

• No sample found for any GEO entries

  #65 opened 10 months ago by NaotoKubota
  5

• ffq [DOI]

  #62 opened a year ago by kylekimler
  3

• id stored in variable

  #63 opened a year ago by rominaappierdo
  0

• Question on ffq [DOIS]

  #61 opened a year ago by ScienceComputing
  2

• [enhancement] Generate Aspera URL

  #59 opened 2 years ago by davetang
  1

• Error: ffq GSE10320

  #57 opened 2 years ago by srp33
  2

• Private GSEs

  #58 opened 2 years ago by lakigigar
  1

• Couldn't find a tree builder with the features you requested: xml. Do you need to install a parser library?

  #56 opened 2 years ago by aaditkapoor
  1

• PRJNA format Bioproject support

  #34 opened 2 years ago by Nusob888
  5

• How open are you to larger contributions?

  #54 opened 2 years ago by Midnighter
  3

• Convert json output to a tsv

  #53 opened 2 years ago by apredeus
  1

• Fetching metadata from NCBI

  #50 opened 2 years ago by Sorcery229
  1

• feature request: return metadata when no fastq available

  #51 opened 2 years ago by crazyhottommy
  1

• False metadata fetched when using BioSample accession number

  #23 opened 3 years ago by trickovicmatija
  8

• Network unreachable behind proxy

  #27 opened 2 years ago by karl-az
  8

• suggestion: add --api-key KEY

  #37 opened 2 years ago by telatin
  1

• Conda version out of date

  #49 opened 2 years ago by half-adder
  3

• conda installation

  #12 opened 4 years ago by mweberr
  7

• `--split` throws an error

  #38 opened 2 years ago by telatin
  1

• Add --version flag

  #43 opened 2 years ago by andersgs
  1

• aws example no longer works

  #32 opened 2 years ago by gordonaa
  4

• ERROR Couldn't find a tree builder with the features you requested: xml.

  #41 opened 2 years ago by chaimol
  2

• ERROR object of type 'NoneType' has no len()

  #40 opened 2 years ago by FFinotello
  4

• [Feature] project level support

  #33 opened 2 years ago by alienzj
  2

• No AWS links parsed (for run SRR8387856)

  #42 opened 2 years ago by konsolerr
  2

• Tests framework `nose` no longer maintained

  #30 opened 2 years ago by ewels
  2

• Enhancements

  #21 opened 2 years ago by sbooeshaghi
  2

• ERROR 429 Client Error: Too Many Requests for url

  #25 opened 2 years ago by mfansler
  1

• HTTP 404 Error

  #26 opened 2 years ago by mfansler
  2

• HTTPError' object has no attribute 'getcode' and HTTP 401

  #28 opened 2 years ago by FrankMaiwald
  1

• Improve tests

  #20 opened 3 years ago by sbooeshaghi
  1

• Incomplete metadata obtained

  #24 opened 3 years ago by Chengwei94
  1

• Connection reset

  #19 opened 3 years ago by Jigyasa3
  2

• fetchngs + ffq = <3 ?

  #22 opened 3 years ago by Midnighter
  2

• `ffq` does not work for some low-number SRRs

  #16 opened 3 years ago by jbloom
  2

• ERROR 'NoneType' object has no attribute 'text'

  #11 opened 4 years ago by lakigigar
  2

• requirements.txt in pypi source file

  #13 opened 4 years ago by druvus
  0

• Incomplete output from DOI

  #9 opened 4 years ago by GeoMicroSoares
  3

• unable to retrieve non-SRR runs (DRR and ERR runs)

  #8 opened 4 years ago by kaylajohnson
  5

• Enable variable length SRRs

  #1 opened 4 years ago by sbooeshaghi
  2

• ffq crashes when run has no data

  #5 opened 4 years ago by sbooeshaghi
  3