structured array I/O
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gtca commented
There might be a problem with reading categorical variables in .h5ad/.h5mu files:
MethodError: Cannot `convert` an object of type
Vector{NamedTuple{(Symbol("0"), Symbol("1"), Symbol("2"), Symbol("3"), Symbol("4"), Symbol("5"), Symbol("6"), Symbol("7"), Symbol("8"), Symbol("9"), Symbol("10"), Symbol("11"), Symbol("12"), Symbol("13")), NTuple{14, Float32}}} to an object of type
Union{AbstractString, Number, DataFrames.DataFrame, Dict, AbstractArray{<:AbstractString}, AbstractArray{<:Number}}
A quick fix would be e.g. to add a permissive type to the read_dict_of_mixed()
function:
function read_dict_of_mixed(f::HDF5.Group; kwargs...)
ret = Dict{
String,
Union{
...
Dict,
<:Any,
},
}()
...
But I expect more reasonable types can be used in the end.