multi-omics
There are 116 repositories under multi-omics topic.
bioFAM/MOFA2
Multi-Omics Factor Analysis
scverse/muon
muon is a multimodal omics Python framework
scverse/mudata
Multimodal Data (.h5mu) implementation for Python
RasmussenLab/MOVE
MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
BIMSBbioinfo/maui
Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
zhangxiaoyu11/OmiEmbed
Multi-task deep learning framework for multi-omics data analysis
cantinilab/Mowgli
Single-cell multi-omics integration using Optimal Transport
wukevin/babel
Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
biobakery/melonnpan
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
selbouhaddani/OmicsPLS
R package for High dimensional data analysis and integration with O2PLS!
JonnyTran/OpenOmics
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
krassowski/multi-omics-state-of-the-field
Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
PMBio/MuDataSeurat
.h5mu files interface for Seurat
scverse/Muon.jl
Muon for Julia
abodein/timeOmics
Time-Course Multi-Omics data integration
glasgowcompbio/pyMultiOmics
Python toolbox for multi-omics data mapping and analysis
cantinilab/HuMMuS
Molecular interactions inference from single-cell multi-omics data
pievos101/GNN-SubNet
Disease subnetwork detection with explainable Graph Neural Networks
OmicsSuite/OmicsSuite.github.io
OmicsSuite website for releasing new version.
himelmallick/IntegratedLearner
Integrated Machine Learning for Multi-omics Classification and Prediction
epruesse/ymp
Flexible omics pipeline
Noble-Lab/HiCFoundation
HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.
ashleymaeconard/TIMEOR
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
krassowski/drug-disease-profile-matching
Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
chenweng1991/redeemR
R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.
LamineTourelab/MOGONET
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedical applications.
muzafferarikan/gNOMO2
gNOMO2 allows integrated multi-omics analyses of microbiomes
scverse/muon-tutorials
Tutorials for multimodal omics data analysis
becavin-lab/bacnet
BACNET is a Java based platform to develop website for multi-omics analysis
nf-core/hicar
Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
ocbe-uio/survomics
Tutorial on survival modeling with omics data
MoTrPAC/MotrpacRatTraining6mo
Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
garimasingh128/Ovarian-Cancer-Subtypes-Identification
🧠Deep Learning-based✔️ Ovarian Cancer🙅🏻♀️ Subtypes Identification using Multi-Omics Data✅
jguhlin/ODG
ODG: Omics Database Generator - Integration toolkit for -omics data
Shamir-Lab/INTEND
INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation datasets covering disjoint sets of samples
CBIGR/SUBATOMIC
The SUbgraph BAsed mulTI-OMIcs Clustering (SUBATOMIC) framework infers interpretable modules with a specific topology.