PMBio/MuDataSeurat

Issues

• Error in WriteH5ADHelper(object, assay, h5, global = TRUE): no slot of name "meta.features" for this object of class "Assay5"

  #18 opened 5 months ago by FlowerPurr
  0

• Error occurred when convert Seurat v5 object to h5ad file

  #16 opened 5 months ago by maxbond233
  2

• HDF5-API Errors: error #000: H5D.c in H5Dvlen_reclaim(): line 732: invalid argument

  #14 opened a year ago by rosanababu
  4

• Actions fail because of SeuratData

  #12 opened 8 months ago by gtca
  1

• Actions fail due to issues with pkgdown

  #13 opened 8 months ago by gtca
  0

• The anndata package expects 'anndata', not 'AnnData' as encoding-type

  #15 opened 8 months ago by vals
  1

• can't read mudata created with muon (python)

  #9 opened 8 months ago by bio-la
  7

• WriteH5MU fails

  #8 opened 2 years ago by bio-la
  4

• WriteH5MU fails with NULL as varm_key after running Seurat workflow

  #7 opened 2 years ago by fhausmann
  4

• I've tested the patch but I still see the same error. Strangely, the error disappears upon forcing my ADT matrix to a sparse matrix using `Seurat::as.sparse`. Now I can load my `mudata` file.

  #10 opened 2 years ago by bio-la
  5

• Allow reading files with the duplicated feature names across modalities

  #11 opened 2 years ago by gtca
  1

• String categories written by MuDataSeurat are read in as bytes by anndata

  #6 opened 2 years ago by ivirshup
  0

• Null categorical codes written incorrectly

  #5 opened 2 years ago by ivirshup
  0

• Remote install fails

  #4 opened 2 years ago by fhausmann
  0

• Columns of type characters converted into byte string

  #3 opened 2 years ago by mdmanurung
  0

• `mu.read` ValueError

  #2 opened 2 years ago by mdmanurung
  2

• invalid class “DimReduc” object

  #1 opened 3 years ago by gjhuizing
  7