scverse/squidpy_notebooks

Issues

• Two improvements to the Xenium notebook

  #128 opened 3 months ago by LucaMarconato
  4

• fix vizgen tutorial to remove titles that appear in index

  #132 opened 2 months ago by giovp
  0

• Git history is getting huge due to Jupyter Notebooks

  #129 opened 3 months ago by timtreis
  4

• environment.yml is missing

  #120 opened a year ago by alanocallaghan
  4

• ValueError: After removing rows with only NaN interactions, none remain.

  #122 opened a year ago by realzehuali
  10

• ValueError with calculate_image_features() in tutorial_visium_hne.ipynb

  #123 opened a year ago by estellad
  0

• remove notebooks from CI

  #112 opened 2 years ago by giovp
  1

• Update version of Tangram

  #99 opened 2 years ago by gaddamshreya
  1

• squidpy.im.ImageContainer.show() not showing image when run in Terminal (MacOS)

  #92 opened 2 years ago by amcrab
  1

• alpha parameter in sq.pl.spatial_scatter

  #88 opened 3 years ago by jnmark
  0

• new notebooks / examples

  #62 opened 3 years ago by hspitzer
  8

• tangram 0.3.0 removes mapping_optimizer.MapperConstrained

  #58 opened 3 years ago by asabjorklund
  2

• Update Tangram tutorial

  #78 opened 3 years ago by michalk8
  1

• scrna-sea and mFISH example

  #79 opened 3 years ago by FADHLyemen
  5

• cell type visualization with segmentation mask

  #61 opened 3 years ago by YubinXie
  1

• update contributing guide

  #69 opened 3 years ago by hspitzer
  4

• update tutorials.rst in squidpy

  #71 opened 3 years ago by hspitzer
  1

• Update tutorials

  #59 opened 4 years ago by michalk8
  1

• imctutorial squidpy environment install fail

  #55 opened 4 years ago by mezwick
  4

• Comment on tutorial_read_spatial

  #47 opened 4 years ago by jwrth
  5

• Make the pipeline more efficient

  #11 opened 4 years ago by michalk8
  2

• Populate examples folder with examples!

  #14 opened 4 years ago by giovp
  4

• List of tutorials that we need to add

  #32 opened 4 years ago by hspitzer
  1

• Clean-up

  #27 opened 4 years ago by michalk8
  13

• Pre-computed tutorials

  #31 opened 4 years ago by michalk8
  1

• References in squidpy_notebooks

  #34 opened 4 years ago by hspitzer
  2

• Additional/missing kwargs in sq.pl.nhood_enrichment

  #28 opened 4 years ago by ilibarra
  1

• Fix generated notebooks

  #21 opened 4 years ago by michalk8
  1

• Fix .css styling for dataframes

  #23 opened 4 years ago by michalk8
  0

• Data caching

  #8 opened 4 years ago by michalk8
  21

• creation of docs with py38 fails

  #16 opened 4 years ago by hspitzer
  6

• Pre-commit modifies files but does not allow commit

  #6 opened 4 years ago by hspitzer
  2

• Invocation Error when calling `tox -e docs`

  #5 opened 4 years ago by hspitzer
  4

• Rename main back to master

  #3 opened 4 years ago by michalk8
  3