Pinned Repositories
10-steps-to-become-a-data-scientist
📢 Ready to learn! you will learn 10 skills as data scientist:📚 Machine Learning, Deep Learning, Data Cleaning, EDA, Learn Python, Learn python packages such as Numpy, Pandas, Seaborn, Matplotlib, Plotly, Tensorfolw, Theano...., Linear Algebra, Big Data, Analysis Tools and solve some real problems such as predict house prices.
AlienindexR
an R package to calculate Alien Index (AI) for genes in target species based on homolog search.
BIC-variants_pipeline
BIC@MSKCC Variants Pipeline
Blacklist
Application for making ENCODE Blacklists
chromosight
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
deplink
Compares the genetic/epigenetic features between cancer cell lines with different dependencies of a gene set (signature)
FScanR
Identifies Programmed Ribosomal Frameshifting (PRF) events from mRNA/cDNA BLASTX output
geNet
A tool to explore large network of genes, generated based on the co-occurence of the genes across several strains
GPSit
Guided Phylogenetic Search in tree (GPSit) is a simple and unsupervised method to do phylogenomic reconstruction.
seanchen607.github.io
My GitHub Pages
seanchen607's Repositories
seanchen607/FScanR
Identifies Programmed Ribosomal Frameshifting (PRF) events from mRNA/cDNA BLASTX output
seanchen607/GPSit
Guided Phylogenetic Search in tree (GPSit) is a simple and unsupervised method to do phylogenomic reconstruction.
seanchen607/deplink
Compares the genetic/epigenetic features between cancer cell lines with different dependencies of a gene set (signature)
seanchen607/geNet
A tool to explore large network of genes, generated based on the co-occurence of the genes across several strains
seanchen607/seanchen607.github.io
My GitHub Pages
seanchen607/10-steps-to-become-a-data-scientist
📢 Ready to learn! you will learn 10 skills as data scientist:📚 Machine Learning, Deep Learning, Data Cleaning, EDA, Learn Python, Learn python packages such as Numpy, Pandas, Seaborn, Matplotlib, Plotly, Tensorfolw, Theano...., Linear Algebra, Big Data, Analysis Tools and solve some real problems such as predict house prices.
seanchen607/AlienindexR
an R package to calculate Alien Index (AI) for genes in target species based on homolog search.
seanchen607/BIC-variants_pipeline
BIC@MSKCC Variants Pipeline
seanchen607/Blacklist
Application for making ENCODE Blacklists
seanchen607/chromosight
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
seanchen607/cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
seanchen607/Coursera-Machine-Learning-Stanford
Machine learning-Stanford University
seanchen607/Evannus
Perl scripts used in Euplotes vannus genomic data analysis
seanchen607/fithic
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
seanchen607/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
seanchen607/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
seanchen607/K27me_simulation
Simulating the distribution of K27 methylation marks
seanchen607/L1EM
Estimate locus specific human LINE-1 expression.
seanchen607/MAGeCKFlute
seanchen607/MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
seanchen607/nichenetr
NicheNet: predict active ligand-target links between interacting cells
seanchen607/Octave
my octave exercises for 2011 stanford machine learning class, posted after the due date of course
seanchen607/rBLAST
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
seanchen607/SNIPER
seanchen607/Stop_codon_usage
seanchen607/tcga_subtype_classification
Detecting cancer subtypes with machine learning.
seanchen607/TGAN
Generative adversarial training for synthesizing tabular data
seanchen607/variant-calling-pipeline-gatk4
Variant Calling Pipeline Using GATK4 and Nextflow
seanchen607/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
seanchen607/Workshop_Annotation
Course materials for "Variants Annotate and Phenotype Analysis"