Pinned Repositories
10-steps-to-become-a-data-scientist
📢 Ready to learn! you will learn 10 skills as data scientist:📚 Machine Learning, Deep Learning, Data Cleaning, EDA, Learn Python, Learn python packages such as Numpy, Pandas, Seaborn, Matplotlib, Plotly, Tensorfolw, Theano...., Linear Algebra, Big Data, Analysis Tools and solve some real problems such as predict house prices.
AlienindexR
an R package to calculate Alien Index (AI) for genes in target species based on homolog search.
BIC-variants_pipeline
BIC@MSKCC Variants Pipeline
Blacklist
Application for making ENCODE Blacklists
chromosight
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
deplink
Compares the genetic/epigenetic features between cancer cell lines with different dependencies of a gene set (signature)
FScanR
Identifies Programmed Ribosomal Frameshifting (PRF) events from mRNA/cDNA BLASTX output
geNet
A tool to explore large network of genes, generated based on the co-occurence of the genes across several strains
GPSit
Guided Phylogenetic Search in tree (GPSit) is a simple and unsupervised method to do phylogenomic reconstruction.
seanchen607.github.io
My GitHub Pages
seanchen607's Repositories
seanchen607/Shared_Broad_Domain_Calling
Three scripts used for calling broad histone mark domains
seanchen607/nonGenicDomains
Creating domains of broad histone marks in nonGenic regions
seanchen607/HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
seanchen607/epiTEome
Simultaneous Detection of Transposable Element Insertion Sites and their DNA Methylation Levels from Plant Genomes
seanchen607/LearnR