How to convert fastq-dumps to R1 /R2

[linsalrob]

Since we use _R1 and _R2 to find mate pairs, here is how to convert fastq-dump output to R1/R2 format

for F in *; do O=$(echo $F | sed -e 's/pass_/pass_R/'); echo $F $O; mv $F $O; done

We should add this to the wiki