Pinned Repositories
2bRAD-M
2bRAD-M-manuscript
This repository provided all source data and codes for generation of all results in the 2bRAD-M manuscript.
2bRAD-M-paper
This repository provided all source data and codes for generation of all results in the 2bRAD-M manuscript. The preprint version of this paper has been available at biorxiv: Species-resolved sequencing of low-biomass microbiomes by 2bRAD-M by Zheng Sun, Shi Huang, Pengfei Zhu, Lam Tzehau, Helen Zhao, Jia Lv, Rongchao Zhang, Lisha Zhou, Qianya Niu, Xiuping Wang, Meng Zhang, Gongchao Jing, Zhenmin Bao, Jiquan Liu, Shi Wang, Jian Xu. BioRxiv, doi: https://doi.org/10.1101/2020.12.01.405647
2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
adversarial-robustness-toolbox
Python library for adversarial attacks and defenses (evasion, poisoning) for neural networks with multiple framework support
age-prediction
crossRanger
pydata-notebook
利用Python进行数据分析 第二版 (2017) 中文翻译笔记
python-for-data-analysis
An introduction to data science using Python and Pandas with Jupyter notebooks.
re-benchmarking
shihuang047's Repositories
shihuang047/age-prediction
shihuang047/2bRAD-M
shihuang047/re-benchmarking
shihuang047/crossRanger
shihuang047/2bRAD-M-manuscript
This repository provided all source data and codes for generation of all results in the 2bRAD-M manuscript.
shihuang047/2bRAD-M-paper
This repository provided all source data and codes for generation of all results in the 2bRAD-M manuscript. The preprint version of this paper has been available at biorxiv: Species-resolved sequencing of low-biomass microbiomes by 2bRAD-M by Zheng Sun, Shi Huang, Pengfei Zhu, Lam Tzehau, Helen Zhao, Jia Lv, Rongchao Zhang, Lisha Zhou, Qianya Niu, Xiuping Wang, Meng Zhang, Gongchao Jing, Zhenmin Bao, Jiquan Liu, Shi Wang, Jian Xu. BioRxiv, doi: https://doi.org/10.1101/2020.12.01.405647
shihuang047/2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
shihuang047/alphafold
Open source code for AlphaFold.
shihuang047/BacDiveR
R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber)
shihuang047/bisb-bootcamp-2020-module08
shihuang047/CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
shihuang047/curatedMetagenomicData
Curated and processed metagenomic data through ExperimentHub
shihuang047/DistVis
shihuang047/docs
Source repository for https://docs.qiime2.org
shihuang047/gemelli
tensor decomposition for spatiotemporal omics data
shihuang047/ipyrad
Interactive assembly and analysis of RAD-seq data sets
shihuang047/kraken2
The second version of the Kraken taxonomic sequence classification system
shihuang047/LightGBM
A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.
shihuang047/mlrMBO
Toolbox for Bayesian Optimization and Model-Based Optimization in R
shihuang047/PM_Rscript
The Rscripts for microbiota analysis
shihuang047/q2-breakaway
QIIME2 plug-in for breakaway
shihuang047/q2_microbiome_age
shihuang047/qurro-mackerel-analysis
Simple re-analysis of mackerel and seawater marker gene sequencing samples in QIIME 2 + Songbird + Qurro
shihuang047/RamEx
shihuang047/regression-benchmarking
shihuang047/SHOGUN
SHallow shOtGUN profiler
shihuang047/SoH_manuscript
shihuang047/stability-analyses
code for simulation studies and experimental microbiome data applications in Stability manuscript
shihuang047/strain2bfunc
shihuang047/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data