Pinned Repositories
2bRAD-M
2bRAD-M-manuscript
This repository provided all source data and codes for generation of all results in the 2bRAD-M manuscript.
2bRAD-M-paper
This repository provided all source data and codes for generation of all results in the 2bRAD-M manuscript. The preprint version of this paper has been available at biorxiv: Species-resolved sequencing of low-biomass microbiomes by 2bRAD-M by Zheng Sun, Shi Huang, Pengfei Zhu, Lam Tzehau, Helen Zhao, Jia Lv, Rongchao Zhang, Lisha Zhou, Qianya Niu, Xiuping Wang, Meng Zhang, Gongchao Jing, Zhenmin Bao, Jiquan Liu, Shi Wang, Jian Xu. BioRxiv, doi: https://doi.org/10.1101/2020.12.01.405647
2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
adversarial-robustness-toolbox
Python library for adversarial attacks and defenses (evasion, poisoning) for neural networks with multiple framework support
age-prediction
crossRanger
pydata-notebook
利用Python进行数据分析 第二版 (2017) 中文翻译笔记
python-for-data-analysis
An introduction to data science using Python and Pandas with Jupyter notebooks.
re-benchmarking
shihuang047's Repositories
shihuang047/pydata-notebook
利用Python进行数据分析 第二版 (2017) 中文翻译笔记
shihuang047/python-for-data-analysis
An introduction to data science using Python and Pandas with Jupyter notebooks.
shihuang047/adversarial-robustness-toolbox
Python library for adversarial attacks and defenses (evasion, poisoning) for neural networks with multiple framework support
shihuang047/aihn-ucsd
This repo is used to release code that is generated by the AI Horizons Network as needed to supplement conference papers and workshops.
shihuang047/american-gut-analyses
shihuang047/assertthat
User friendly assertions for R
shihuang047/auto-sklearn
Automated Machine Learning with scikit-learn
shihuang047/biom-format
The Biological Observation Matrix (BIOM) Format Project
shihuang047/calour
exploratory and interactive microbiome analyses based on heatmaps
shihuang047/DEICODE
Robust Aitchison RPCA on sparse omics datasets
shihuang047/DMBC
A Bayes classifier based on the Dirichlet-Multinomial distribution
shihuang047/DOC
Dissimilarity Overlap Curve analysis
shihuang047/FEAST
Fast expectation maximization for microbial source tracking
shihuang047/harrietr
An `R` package for various phylogenetic and evolutionary biology data manipulations
shihuang047/IMP_analyses
immigrant microbiome project related analyses
shihuang047/MAX-Facial-Age-Estimator
Detect faces in an image and estimate the age of each face
shihuang047/metadata_cleaning
metadata_clean is a metadata curation tool that applies rules form the user and passed as a yaml file
shihuang047/microbio_aDiv-1
shihuang047/MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
shihuang047/philr
Phylogenetic Isometric Log Ratio
shihuang047/PopPhy-CNN
shihuang047/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
shihuang047/pytorch-seq2seq
An open source framework for seq2seq models in PyTorch.
shihuang047/q2-perc-norm
QIIME2 plugin for percentile normalization to correct for batch effects in microbiome case-control studies
shihuang047/qiime2
Official repository for the QIIME 2 framework.
shihuang047/ranger
A Fast Implementation of Random Forests
shihuang047/rhapsody
Neural networks for microbe-metabolite interaction analysis
shihuang047/scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
shihuang047/tidybayes
Bayesian analysis + tidy data + geoms (R package)
shihuang047/wgsim
Reads simulator