Pinned Repositories
1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
996.ICU
Repo for counting stars and contributing. Press F to pay respect to glorious developers.
abra
Assembly Based ReAligner
active_admin
The administration framework for Ruby on Rails applications.
AdminLTE
AdminLTE - Free Premium Admin control Panel Theme That Is Based On Bootstrap 3.x
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
alipay
An Unofficial Alipay API for Python
alipay-dev-docs
Alipay dev docs downloaded from its official website
seqtk
Toolkit for processing sequences in FASTA/Q formats
simexin's Repositories
simexin/1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
simexin/alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
simexin/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
simexin/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
simexin/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
simexin/clinvar
Parsing ClinVar data
simexin/cnvkit
Copy number variant detection from targeted DNA sequencing
simexin/cnvkit-examples
Example datasets for CNVkit (http://github.com/etal/cnvkit)
simexin/Connor
Deduplication based on custom inline DNA barcodes.
simexin/coursera-archive
Coursera Archive
simexin/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
simexin/Duplex-Sequencing
simexin/freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
simexin/homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
simexin/icages
iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient
simexin/icr142-validation
Preparation scripts and bcbio integration for the ICR142 NGS validation series
simexin/IMPACT-SV
Detection of Structural Variants Using Delly and Annotation using dRanger
simexin/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
simexin/nextflow
A DSL for data-driven computational pipelines
simexin/Numpy-Tutorial-SciPyConf-2016
SciPy 2016 NumPy tutorial
simexin/proxifier-profiles
My Proxifier profiles
simexin/SeQC
SQL databases from BAM/SAM files with a focus on QC.
simexin/setup-simple-pptp-vpn
Setup Simple PPTP VPN Server for Ubuntu and Debian
simexin/speedseq
A flexible framework for rapid genome analysis and interpretation
simexin/tabtk
Toolkit for processing TAB-delimited format
simexin/ted2srt
Download bilingual subtitles of TED talks
simexin/user-training
HMS Research Computing User Training
simexin/uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
simexin/wdl
Workflow Description Language - Specification and Implementations
simexin/youtube-dl
Small command-line program to download videos from YouTube.com and other video sites