siyunw

siyunw's Stars

• aidenlab/Juicebox

  Visualization and analysis software for Hi-C data -

  Language:Java23557

• liulab-dfci/MAESTRO

  Single-cell Transcriptome and Regulome Analysis Pipeline

  Language:C27074

• GreenleafLab/ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R367129

• COMBINE-lab/salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

  Language:C++752159

• pinellolab/scATAC-benchmarking

  Benchmarking computational single cell ATAC-seq methods

  Language:Jupyter Notebook17337

• r3fang/SnapATAC

  Analysis Pipeline for Single Cell ATAC-seq

  Language:R298124

• klarman-cell-observatory/hdst

  Language:Jupyter Notebook193

• chris-mcginnis-ucsf/MULTI-seq

  R implementation of MULTI-seq sample classification workflow

  Language:R5710

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.2k894

• 10XGenomics/cellranger

  10x Genomics Single Cell Analysis

  Language:Rust34291

• jhkorhonen/MOODS

  MOODS: Motif Occurrence Detection Suite

  Language:C++9512

• iaconogi/bigSCale2

  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

  Language:R10138

• pierrebaillargeon/Microplate-Assistive-Pipetting-Light-Emitter

  Microplate Assistive Pipetting Light Emitter (M.A.P.L.E.)

  Language:C++135

• ENCODE-DCC/atac-seq-pipeline

  ENCODE ATAC-seq pipeline

  Language:Python376170

• dbrg77/plate_scATAC-seq

  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method

  Language:Jupyter Notebook4214

• AllonKleinLab/SPRING

  Language:OpenEdge ABL6614

• samtools/hts-specs

  Specifications of SAM/BAM and related high-throughput sequencing file formats

  Language:TeX635174

• relipmoc/skewer

  Language:C++9217

• lh3/wgsim

  Reads simulator

  Language:C25691

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C918287

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k500