sk-sahu's Stars
hoffmangroup/pdfcomments
sdparekh/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
aaronpeikert/reproducible-research
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
vanheeringen-lab/ANANSE
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
mlf-core/machine_learning_determinism_evaluation
GPU deterministic machine learning with Nextflow
tidyomics/plyranges
A grammar of genomic data transformation
smped/ngsReports
luslab/nf-clip
Repo for the CLIP nextflow analysis pipeline
markziemann/mitch
An R package for multi-dimensional pathway enrichment analysis
PMCC-BioinformaticsCore/janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
mwaskom/StatApps
Small web apps that illustrate statistical concepts
tqiaowen/LSTrAP-Cloud
Co-expression Network on Google Colaboratory.
AndreaCirilloAC/ramazon
run your shiny App on Amazon AWS running a function. √
etetoolkit/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
codingene/snakemake-base
A basic boilerplate structure for snakemake based pipelines.
snakemake/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
roblanf/sangeranalyseR
functions to analyse sanger sequencing reads in R
vagarwal87/Xpresso
Predicting gene expression levels from genomic sequences
lcolladotor/biocthis
Automate package and project setup for Bioconductor packages
lh3/biofast
Benchmarking programming languages/implementations for common tasks in Bioinformatics
koriege/acctotax
Get NCBI Taxonomy lineages and subtrees from various queries
dondi/GRNsight
Web app and service for modeling and visualizing gene regulatory networks.
thelovelab/rnaseqDTU
RNA-seq workflow: differential transcript usage
sk-sahu/mamba
docker image for mamba - https://github.com/QuantStack/mamba
sk-sahu/PGRB
Practical Guide to Reproducibility in Bioinformatics (Work In Progress)
chapmanb/dotfiles
~chapmanb dotfile organization for backup and sychronization
cytoscape/ipycytoscape
A Cytoscape Jupyter widget
singha53-zz/omicsBioAnalytics
Omics BioAnalytics - RShiny web app for bioinformatics analyses
singha53-zz/omics-bioanalytics-alexa-skill
Companion Alexa Skill for the Omics BioAnalytics R Shiny web app
biowasm/biowasm
WebAssembly modules for genomics