skembel/picante

Issues

• node.age error in ses.pd function

  #36 opened a year ago by pabuveery
  5

• PD.ses for low sample sizes

  #38 opened 3 months ago by abhitims
  2

• phyEstimateDisc vs phyEstimate: xtfrm.data.frame(x) : cannot xtfrm data frames

  #33 opened 2 years ago by alrichardbollans
  7

• initial values for "corSymm" must be between -1 and 1

  #37 opened 10 months ago by sapuizait
  2

• Error in dimnames(x) <- dnx : 'dimnames' applied to non-array

  #25 opened 4 years ago by Tom-python0121
  5

• Error in randomizeMatrix

  #32 opened a year ago by Angelly057
  2

• Hello, I believe I have a serious issue.

  #35 opened a year ago by sixgodliusen
  1

• match.phylo.data fails when given a data.frame with a single column

  #8 opened 2 years ago by skembel
  1

• How to calculate beta NRI and NTI in picante

  #31 opened 2 years ago by liaoyunshi
  0

• PD rooted/unrooted NULL error

  #29 opened 2 years ago by damioresegun
  3

• rarefaction and PD?

  #28 opened 3 years ago by marwa38
  2

• trialswap and independentswap algorithms don't preserve sample species richness

  #27 opened 3 years ago by joelnitta
  5

• Difference between richness and sample.pool null.model in ses.mpd/ses.pd/ses.mntd ?

  #22 opened 3 years ago by gowachin
  2

• Phylogeny input file

  #24 opened 3 years ago by carolinapinapaez
  1

• randomizeMatrix with null.model = "independentswap" fails on small communities

  #26 opened 3 years ago by joelnitta
  2

• Can monophyletic taxa in the tree be used as groups for differential testing?

  #19 opened 5 years ago by Jigyasa3
  1

• bug in `pblmpredict` when argument `predict.originals` is TRUE

  #18 opened 5 years ago by guiblanchet
  3

• Can AITCHISON distance be used in MNTD and MPD calculations?

  #20 opened 5 years ago by Jigyasa3
  1

• Feature request: biplot for Inter-Community Mean Pairwise Distance for traits data

  #21 opened 5 years ago by Jigyasa3
  1

• Faulty assumption in node.age picks wrong root

  #23 opened 5 years ago by FlukeAndFeather
  1

• Bug in ses.pd function

  #17 opened 6 years ago by rafmolven
  3

• Long lines are cut off in vignette PDF

  #13 opened 6 years ago by colinbrislawn
  2

• abundance weighted PD

  #15 opened 6 years ago by wcornwell
  2

• Update MPD calculation to offer option to include/exclude intra-species distances

  #10 opened 8 years ago by skembel
  0

• abundance weighted MPD error

  #4 opened 6 years ago by leorjorge
  2

• pd cannot use ultrametric tree(?)

  #12 opened 6 years ago by sagitaninta
  1

• Strange PD results

  #14 opened 6 years ago by Greblica
  1

• Kcalc and phylosignal fail if the supplied data are not a vector

  #9 opened 8 years ago by skembel
  0

• matrix2sample fails if rownames missing

  #1 opened 9 years ago by skembel
  2