sleyn

sleyn's Stars

• microsoft/Web-Dev-For-Beginners

  24 Lessons, 12 Weeks, Get Started as a Web Developer

  Language:JavaScript86.7k2.7k30112.9k

• microsoft/Data-Science-For-Beginners

  10 Weeks, 20 Lessons, Data Science for All!

  Language:Jupyter Notebook29.1k5181186k

• shap/shap

  A game theoretic approach to explain the output of any machine learning model.

  Language:Jupyter Notebook23.6k2452.6k3.3k

• networkx/networkx

  Network Analysis in Python

  Language:Python15.5k2813.2k3.3k

• pditommaso/awesome-pipeline

  A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

  6.3k23227633

• dair-ai/Mathematics-for-ML

  🧮 A collection of resources to learn mathematics for machine learning

  4.9k7815480

• IndrajeetPatil/ggstatsplot

  Enhancing {ggplot2} plots with statistical analysis 📊📣

  Language:R2.1k43598197

• bbuchfink/diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1.1k37725181

• nanxstats/ggsci

  🦄 Scientific journal and sci-fi themed color palettes for ggplot2

  Language:R680173472

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python558149369

• sacdallago/bio_embeddings

  Get protein embeddings from protein sequences

  Language:HTML4821621369

• marbl/Krona

  Interactively explore metagenomes and more from a web browser.

  Language:JavaScript46838178104

• eliocamp/ggnewscale

  Multiple Fill, Color and Other Scales in `ggplot2`

  Language:TeX414116718

• shenwei356/taxonkit

  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

  Language:Go405710432

• talgalili/heatmaply

  Interactive Heat Maps for R Using plotly

  Language:R3862425473

• stemangiola/tidyHeatmap

  Draw heatmap simply using a tidy data frame

  Language:R33866125

• a-slide/pycoQC

  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

  Language:Python27649940

• pangenome/odgi

  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

  Language:C++2031315041

• alimanfoo/pysamstats

  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

  Language:Python1941210043

• Rostlab/SeqVec

  Modelling the Language of Life - Deep Learning Protein Sequences

  Language:Python11991312

• bhattlab/MGEfinder

  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

  Language:Python11625117

• grimmlab/MicrobiomeBestPracticeReview

  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

  Language:Shell1153139

• SojiroFukuda/sview-gui

  GUI for data visualisation based on a csv file or pandas' DataFrame

  Language:Python924217

• jrjhealey/bioinfo-tools

  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.

  Language:Python593118

• jhawkey/IS_mapper

  IS mapping software

  Language:Python5374714

• Rostlab/goPredSim

  Language:Python441064

• lehner-lab/DiMSum

  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies

  Language:R307226

• ChrispinChaguza/RCandy

  RCandy: an R package for visualising homologous recombination events in bacterial genomes

  Language:R19265

• yun-vis/Metabopolis

  Biological Pathway Visualization

  Language:C++10215

• kblin/merge-gbk-records

  Merge multiple GenBank records using a defined spacer sequence

  Language:Python6421