sleyn

sleyn's Stars

• wagoodman/dive

  A tool for exploring each layer in a docker image

  Language:Go48.4k3643351.8k

• girliemac/a-picture-is-worth-a-1000-words

  I am trying to describe complex matters in simple doodles!

  11.2k24914801

• GoogleContainerTools/container-diff

  container-diff: Diff your Docker containers

  Language:Go3.8k65159234

• pydata/xarray

  N-D labeled arrays and datasets in Python

  Language:Python3.7k1064.5k1.1k

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k17210620

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++2k51524334

• csinva/imodels

  Interpretable ML package 🔍 for concise, transparent, and accurate predictive modeling (sklearn-compatible).

  Language:Jupyter Notebook1.4k2493125

• crazyhottommy/getting-started-with-genomics-tools-and-resources

  Unix, R and python tools for genomics and data science

  Language:Shell1.2k8711351

• samtools/hts-specs

  Specifications of SAM/BAM and related high-throughput sequencing file formats

  Language:TeX659100435172

• conda/conda-lock

  Lightweight lockfile for conda environments

  Language:Python50012293104

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python478818750

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4561424356

• hadley/emo

  Easily insert emoji into R and RMarkdown

  Language:R416176053

• pangenome/pggb

  the pangenome graph builder

  Language:Shell4021417644

• krzjoa/awesome-r-dataviz

  Curated resources about Data Visualization, Drawing & Publishing in R

  Language:R37022565

• moul/docker-diff

  :whale: Compare Docker images

  Language:Shell1576624

• google/deepsomatic

  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

  148113215

• thegenemyers/FASTGA

  Pairwise whole genome aligner

  Language:C1401036

• business-science/correlationfunnel

  Speed Up Exploratory Data Analysis (EDA)

  Language:R13510827

• RamiKrispin/shinylive

  A guide for deploying Shinylive Python application into Github Pages

  Language:HTML1334219

• lima1/PureCN

  Copy number calling and variant classification using targeted short read sequencing

  Language:R129734133

• phac-nml/staramr

  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

  Language:Python120712326

• asl/BandageNG

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++116129710

• JohnLonginotto/pybam

  Very simple, pure python, BAM file reader

  Language:Python799732

• RAHenriksen/NGSNGS

  NGSNGS: Next generation simulator for next generation sequencing data

  Language:C++505155

• gogetdata/ggd-cli

  The command-line interface to GGD

  Language:Python425163

• salzman-lab/SPLASH

  Language:Python42654

• bacpop/mandrake

  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

  Language:Python366232

• GerkeLab/TCGAhrd

  Homologous recombination deficiency in TCGA PanCancer Atlas

  Language:HTML24204

• p-koo/evoaug

  Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics

  Language:Python19204