slowkoni/rfmix

Issues

• Aborted (core dumped)

  #28 opened 4 years ago by wangtao-prog
  2

• Assertion failed: (n_ref != 0), function add_node, file random-forest.cpp, line 248.

  #36 opened 2 years ago by Wei-Chen-Pan
  1

• not producing any output file even after waiting for 3 hour

  #46 opened a year ago by Shaileshdesai76
  2

• Easybuild recipe

  #48 opened 5 months ago by la-mendicino
  0

• Unexpected global diploid results.

  #32 opened 3 years ago by mfknie
  1

• Segmentation during scanning for optimal CRF weight

  #43 opened 2 years ago by kuangzhuoran
  4

• phase correction?

  #7 opened 6 years ago by vacanfield
  11

• Ideal referent variant amount and genetic map to speed up analysis.

  #47 opened a year ago by nick338
  4

• How to visually display the chromosome ancestry segments?

  #9 opened 6 years ago by mocksu
  7

• Convert RFMix 2.0 output into RFMIx 1.5. Viterbi output?

  #45 opened 2 years ago by MrLocuace
  1

• Program keeps crashing when generating simulation samples on RFMIX v2.03-r0 but not RFMIX v2.02-r1

  #24 opened 5 years ago by deven-n-vyas
  2

• Output error

  #44 opened 2 years ago by xuefenfei712
  0

• Unable to handle the swap of REF/ALT allele?

  #42 opened 2 years ago by eldronzhou
  0

• Does not build on Apple M SOC

  #41 opened 2 years ago by thebigcorporation
  0

• Chromosome X

  #39 opened 2 years ago by eberlepe
  0

• Matching my sample data and reference data

  #38 opened 2 years ago by dongleihu
  0

• Fail to install

  #37 opened 2 years ago by xiw588
  0

• Haplotype order

  #33 opened 3 years ago by JiawenChenn
  1

• Update docs

  #35 opened 2 years ago by BJWiley233
  0

• segmentation fault

  #14 opened 6 years ago by cwarden45
  4

• Stuck after internal simulation of samples

  #34 opened 3 years ago by FranjoIM
  2

• Stuck at generating simulation samples

  #5 opened 6 years ago by antmarge
  8

• whole genome level ancestry feature from version 1 missing

  #25 opened 5 years ago by raqueldias
  1

• local ancestry for each input snp

  #12 opened 6 years ago by complexgenome
  2

• Helping in installing on a Mac machine

  #31 opened 3 years ago by guidebortoli
  0

• Segmentation during scanning for optimal CRF weight for certain chromosomes only

  #19 opened 5 years ago by rozaimirazali
  4

• msp file and reference ancestral populations

  #30 opened 4 years ago by astockwell1
  0

• RFMix SetUp and Population Issue

  #29 opened 4 years ago by gabopg97
  0

• Start position in msp file

  #27 opened 4 years ago by murielgb
  0

• reference haplotypes reanalyzed but missing in the <ouput>.msp.tsv file

  #26 opened 4 years ago by sroliveiraa
  0

• RFMix Output Format (for v1)

  #15 opened 6 years ago by cwarden45
  10

• Aborted (core dumped)

  #11 opened 6 years ago by XuexueLiu
  7

• Output fitted theta parameter files

  #23 opened 5 years ago by LuZhangH
  0

• Can rfmix be used in other species except for hunman

  #22 opened 5 years ago by liufy11
  1

• output sis.tsv and interpretation

  #21 opened 5 years ago by laurabuggiotti
  1

• Informations about simulate tool

  #20 opened 5 years ago by jcgrenier
  1

• Likely errors near telomeres and centromeres

  #10 opened 6 years ago by mocksu
  1

• Pruning variants

  #18 opened 6 years ago by jasmine-alvarez
  0

• The .msp.tsv file

  #17 opened 6 years ago by rozaimirazali
  1

• STOP: genetic map for chromosome is not strictly increasing.

  #16 opened 6 years ago by rozaimirazali
  2

• map file?

  #8 opened 6 years ago by complexgenome
  3

• Stopping at "Growing forests"

  #13 opened 6 years ago by alessandrotestori
  0

• RFMix_PopPhased skipping growing forests

  #6 opened 6 years ago by angelcymak
  4

• RFMix make

  #3 opened 7 years ago by ftlin22
  6

• How to install?

  #1 opened 8 years ago by silvewheat
  1