slt666666/NLRtracker

Issues

• NLRtracker.R - `outdir` prepended twice to name of `..._NLRtracker.tsv`, cannot open file

  #19 opened 8 months ago by kmlhpk
  1

• Generating meme.xml used for fimo execution in NLRtracker.sh software

  #18 opened a year ago by wlhCNU
  0

• line 126: interproscan.sh: command not found & line 128: interproscan.sh: command not found

  #17 opened 2 years ago by lariver2
  9

• No outputs

  #16 opened 2 years ago by Lsz-20
  12

• No outputs

  #15 opened 2 years ago by Lsz-20
  0

• Empty NBARC.fasta and NLR.fasta files; InterProScan skips some proteins

  #14 opened 2 years ago by marketavlkova
  2

• mkdir: cannot create directory 'log': File exists

  #13 opened 2 years ago by marketavlkova
  1

• Invalid GFF3 attributes

  #12 opened 2 years ago by darcyabjones
  1

• Classification of annotated R genes to characterized R genes

  #11 opened 2 years ago by Saadserfraz
  0

• empty outputs

  #9 opened 3 years ago by Lsz-20
  3

• Running FIMO on nucleotide data?

  #10 opened 3 years ago by Shellfishgene
  2

• Is it possible to run on assembled genome file

  #8 opened 3 years ago by Saadserfraz
  1

• About version

  #7 opened 3 years ago by Lsz-20
  11

• FIMO failed

  #5 opened 3 years ago by sadikmu
  3

• Can NLRtracker use as input file contigs obtained from RenSeq?

  #3 opened 3 years ago by cahuparo
  2

• Parsing fasta headers

  #2 opened 4 years ago by dence
  1

• Errors when running NLRtracker

  #1 opened 4 years ago by soungalo
  2