snayfach/MAGpurify

Issues

• Interpretation of cutoff values

  #25 opened 2 years ago by donovan-h-parks
  2

• too many bam files

  #24 opened 2 years ago by dmneedha
  0

• "lastal: can't open file: -P" When running "clade-markers"

  #14 opened 2 years ago by hqvuong
  4

• add flag for max % of bin removed

  #4 opened 2 years ago by snayfach
  0

• Conspecific module

  #12 opened 2 years ago by snayfach
  0

• Add FPR cutoffs to modules

  #11 opened 2 years ago by snayfach
  0

• Add SNP density module

  #13 opened 2 years ago by snayfach
  0

• better instructions for downloaded and unpacking database

  #3 opened 2 years ago by snayfach
  0

• add arguments allowing selecting which modules to use for contamintion removal

  #1 opened 2 years ago by snayfach
  0

• Integrate mash with run_qc.py conspecific

  #2 opened 2 years ago by snayfach
  0

• lastal: not found

  #23 opened 2 years ago by snayfach
  0

• Issue with building my reference database for conspecific module

  #22 opened 2 years ago by djung0928
  0

• Analysis automation

  #20 opened 2 years ago by Philippemetagenomica
  2

• phylo-markers: no output file found...

  #21 opened 2 years ago by TKsh6
  0

• Error running phylo-markers

  #19 opened 3 years ago by jtamames
  0

• tetra-freq unable to handle "N" nucleotide

  #16 opened 4 years ago by mmp3
  1

• Adding another genome to known-contam?

  #18 opened 3 years ago by michoug
  0

• Suggestions based on trial use

  #17 opened 4 years ago by jdwinkler-lanzatech
  1

• Question about --weighted-means and % bin removed

  #15 opened 4 years ago by brymerr921
  0

• Conda package

  #5 opened 5 years ago by SilasK
  1

• SyntaxError: Missing parentheses in call to 'print'. Did you mean print("\n## Computing mean genome-wide GC content")?

  #6 opened 5 years ago by SilasK
  1

• No module named 'utility'

  #7 opened 5 years ago by SilasK
  1