Pinned Repositories
PFB2012
Code and samples from lecture and review sessions
primer3_tab
cgi scripts for a very simple primer3 interface and parsing output to tab-delimited
RelocaTE
Find the locations of TEs using the TSD in unassembled short reads by comparing to a closely related reference genome assembly
RT-PCR_primers
use a seqFeatureStore database to create sequence to use with Primer3 for primers that span exons
scripts_by_sofia
my scripts
SIMR_ontology
Controlled Vocabulary used at SIMR
srobb1's Repositories
srobb1/RelocaTE
Find the locations of TEs using the TSD in unassembled short reads by comparing to a closely related reference genome assembly
srobb1/SIMR_ontology
Controlled Vocabulary used at SIMR
srobb1/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
srobb1/Apple-Snail-Expression-Pattern-Ontology
Apple Snail Expression Pattern Ontology
srobb1/biological-spatial-ontology
An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces
srobb1/Chado
the GMOD database schema
srobb1/chickenCoopController
my chicken coop controller
srobb1/class_test
srobb1/CSHLProgForBiol2018
CSHL Prog for Bio 2018, trinity rnaseq section
srobb1/evop2018
srobb1/obi
The Ontology for Biomedical Investigations
srobb1/OBOFoundry.github.io
OBO Foundry Ontology Registry
srobb1/OLS-treeview
This is the standalone widget for the OLS treeview
srobb1/ontology-starter-kit
Bootstrap an OBO Library ontology
srobb1/pato
PATO - the Phenotype And Trait Ontology
srobb1/PFB2018_testing
testing stuff
srobb1/PFB_problemsets
Solutions for PFB Problemsets
srobb1/purl.obolibrary.org
A new system for managing OBO PURLs
srobb1/simr_imports
srobb1/simrbase_tools
drupal module for simrbase misc functions
srobb1/simro
Stowers Institute for Medical Research Ontology ( in developement )
srobb1/t4d8
This is a temporary repository for Drupal 8 upgrade for Tripal v4. It is meant to house issues related to the upgrade.
srobb1/test-probsets
test-repo
srobb1/tripal
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
srobb1/tripal_expression_cvterm
Tripal/Drupal Module for creating drupal nodes with chado expression cvterms
srobb1/tripal_ontologyPages
Display ontology term pages by retrieving info from ols
srobb1/trpdownload_nbcluster
download csv for nbcluster data
srobb1/uberon
uber-anatomy ontology
srobb1/upheno
srobb1/worm_order_form