stjude-rust-labs/ngs

Issues

• feat: implement SAM viewing in `ngs view`

  #38 opened 8 months ago by claymcleod
  0

• feat: implement BAM viewing in `ngs view`

  #37 opened 8 months ago by claymcleod
  0

• feat: extend GFF to support query region for `ngs view`

  #18 opened 8 months ago by claymcleod
  1

• feat: extend GTF to support query region for `ngs view`

  #19 opened 8 months ago by claymcleod
  1

• feat: add indexing for SAM files

  #25 opened 8 months ago by claymcleod
  1

• feat: add SAM/BAM/CRAM sorting

  #34 opened 8 months ago by claymcleod
  1

• revise: remove custom header checks

  #32 opened 2 years ago by claymcleod
  0

• revise: unify all contexts within `ngs`

  #29 opened 2 years ago by claymcleod
  0

• feat: implement GTF for `ngs view`

  #13 opened 2 years ago by claymcleod
  0

• revise: audit `ngs view` for better error messages with `with_context`

  #20 opened 2 years ago by claymcleod
  0

• revise: audit `ngs convert` for better error messages with `with_context`

  #21 opened 2 years ago by claymcleod
  0

• revise: use async readers/writers for `ngs view`

  #17 opened 2 years ago by claymcleod
  0

• feat: implement SAM to CRAM conversion within `ngs convert`

  #15 opened 2 years ago by claymcleod
  0

• feat: implement BAM to CRAM conversion within `ngs convert`

  #16 opened 2 years ago by claymcleod
  0

• feat: implement GFF for `ngs view`

  #12 opened 2 years ago by claymcleod
  0

• feat: implement SAM for `ngs view`

  #14 opened 2 years ago by claymcleod
  0

• ngslib-lint: add basic linter with easiest checks to do.

  #1 opened 2 years ago by claymcleod
  0

• ngslib-generate: given a reference genome and a SNV/Indel variant file, generate an example SAM/BAM/CRAM file

  #2 opened 2 years ago by claymcleod
  0