Pinned Repositories
Organism_Onboarding
A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline
agrivectors
Skin for agrivectors.org
bio-chado-loader
Load biological data into the Chado database with Bio::Chado::Schema
citrusgreening
user interface for the citrusgreening site https://citrusgreening.org/
ClostridiumGenomeSequencing
OrthoMCL_PostProcessing
scripts for working with OrthoMCL clustering results
Pred_cutoff
Pred_cutoff pipeline for HMM and PWM predictions
sevenbridges-python
SevenBridges Python Api bindings
Utils
Some simple but handy scripts
suryasaha's Repositories
suryasaha/Pred_cutoff
Pred_cutoff pipeline for HMM and PWM predictions
suryasaha/Utils
Some simple but handy scripts
suryasaha/ClostridiumGenomeSequencing
suryasaha/OrthoMCL_PostProcessing
scripts for working with OrthoMCL clustering results
suryasaha/sevenbridges-python
SevenBridges Python Api bindings
suryasaha/ACP_gut_omics_PlosOne_2017
suryasaha/Conf_files
Configuration files for fresh installations.
suryasaha/data-repository-service-schemas
A repository for the schemas used for the Data Repository Service.
suryasaha/Docs
suryasaha/Endosym_projs
suryasaha/endosymbiont-analysis
Repo for the various scripts I wrote while analyzing the endosymbiont genomes. Also holds some other supporting documents for the project
suryasaha/jbrowse-setup
Setup scripts for CG jbrowse
suryasaha/jupyter-scipy-cc2020
Docker files from container camp March 2020
suryasaha/markdown_readme
Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.
suryasaha/MCOT
ACP MCOT transcriptome
suryasaha/mzRNAseq
suryasaha/NGS
Sequencing related stuff
suryasaha/ngsutils
Tools for next-generation sequencing analysis
suryasaha/NY_T1_genome
suryasaha/pbalign
pbalign maps PacBio reads to reference sequences and saves alignments to a SAM or cmp.h5 file.
suryasaha/Pred_parsers
Parsers for prediction tools
suryasaha/ProxMiner
A association rule based and graph mining pipeline to identify frequently co-occuring repeat regions in chromosomal length genome sequences.
suryasaha/RepeatMasker_Engines
Comparison of the four supported engines: cross_match, wublast, RMBlast and nhmmer
suryasaha/RepeatMining
suryasaha/rnaseq_diffexp
suryasaha/shell-novice
Software Carpentry introduction to the shell for novices.
suryasaha/Specifications
GFF and GVF specification documents
suryasaha/Templates
Templates for shell, R, Perl scripts
suryasaha/tomato_genome
Meta-data repository
suryasaha/Util_modules