Pinned Repositories
5prime_stop_paper
Code from paper
Bandiera-et-al-2021-scripts
Scripts used in Bandiera et al., 2021.
concur
CONCUR is a tool for calculating codon usage from Ribo-seq data.
Drosophila_TE_libraries
De-novo transposon libraries for 119 Drosophilid species.
Drosophila_unistrand_clusters
Analysis of flamenco and other unistrand piRNA clusters across Drosophila
FlaHMM
FlaHMM: unistrand flamenco-like piRNA cluster prediction in Drosophila species using hidden Markov models
FlaHMM-supplement
Supplementary repository for FlaHMM
keep_best
Used to keep only the best alignment when the same fragment is aligned to two (e.g. parental) genomes.
Selmi-et-al-scripts
Scripts used in Selmi et al.
trans-bsseq
Analysis of transcriptional bisulfite sequencing data
susbo's Repositories
susbo/concur
CONCUR is a tool for calculating codon usage from Ribo-seq data.
susbo/5prime_stop_paper
Code from paper
susbo/trans-bsseq
Analysis of transcriptional bisulfite sequencing data
susbo/Drosophila_unistrand_clusters
Analysis of flamenco and other unistrand piRNA clusters across Drosophila
susbo/Bandiera-et-al-2021-scripts
Scripts used in Bandiera et al., 2021.
susbo/Drosophila_TE_libraries
De-novo transposon libraries for 119 Drosophilid species.
susbo/FlaHMM
FlaHMM: unistrand flamenco-like piRNA cluster prediction in Drosophila species using hidden Markov models
susbo/FlaHMM-supplement
Supplementary repository for FlaHMM
susbo/keep_best
Used to keep only the best alignment when the same fragment is aligned to two (e.g. parental) genomes.
susbo/Selmi-et-al-scripts
Scripts used in Selmi et al.