susbo

susbo's Stars

• microsoft/BioGPT

  Language:Python4.3k6991450

• duerrsimon/bioicons

  A library of free open source icons for science illustrations in biology and chemistry

  Language:Vue1.3k174373

• giocomai/ganttrify

  Create beautiful Gantt charts with ggplot2

  Language:R654115161

• instadeepai/nucleotide-transformer

  🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

  Language:Python446225452

• autosome-ru/LegNet

  accurate prediction of promoter activity and variant effects from massive parallel reporter assays

  Language:Jupyter Notebook26612

• bergmanlab/drosophila-transposons

  Drosophila transposable element canonical sequences

  Language:Rich Text Format2482711

• zhpn1024/ribotish

  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data

  Language:Python243337

• acceleratescience/large-language-models

  Get an introduction to how large language models work, and how to get up and running quickly.

  Language:Jupyter Notebook22217

• clintval/cvbio

  Artisanal 🤣 bioinformatics tools and pipelines in Scala

  Language:Scala203123

• annaprotasio/TE_ManAnnot

  Accompanying repository for our publications on manual curation methods for Transposable Elements.

  Language:Shell19334

• acceleratescience/diffusion-models

  An introduction to diffusion models and how to apply them in a practical way

  Language:Jupyter Notebook72

• snoweye/cubfits

  Codon Usage Bias Fits

  Language:R7407

• susbo/concur

  CONCUR is a tool for calculating codon usage from Ribo-seq data.

  Language:Perl7230

• santiago1234/MZT-rna-stability

  Crosstalk between codon optimality and 3' UTR cis-elements dictates mRNA stability

  Language:Jupyter Notebook6202

• FlyCellAtlas/data_processing

  Language:Nextflow51

• LarracuenteLab/Dmelanogaster_satDNA_regulation

  Language:Python3

• rberrens/SPOCD1-piRNA_directed_DNA_met

  Code for data analysis of Zoch et al., 2020

  Language:R33

• flyseq/2023_drosophila_assembly

  Genome assembly pipelines used in Kim et al. 2023

  Language:Python21

• FredrikSvenssonUK/DREAM2022_Camformers

  Submission to DREAM2022 from the Camformers team

  Language:Python2100

• jiayuwen/CRMnet

  Language:Python21

• apalania/RandomPromoter-DREAM-Challenge

  Language:Python10

• kerogens101/Dmel_piCs

  Language:Shell1

• marianna-trapotsi/MCScan_plot

  Language:Python1100