tanjimin/C.Origami

Issues

• The pre-trained models of other cell types

  #32 opened a year ago by lhy0322
  2

• Training and prediction at 5kb resolution

  #46 opened 4 months ago by zhang-jiankun
  2

• GRAM importance score

  #49 opened 4 months ago by thomas-reimonn
  2

• Issues with Training the C.Origami Model Using Only Sequence Data and Integrating Multi-Species Data

  #48 opened 4 months ago by hanshandong2024
  4

• Issues with Training the C.Origami Model Using Only Sequence Data and Integrating Multi-Species Data

  #47 opened 4 months ago by hanshandong2024
  0

• Independant chance of returning sequence complement

  #43 opened 5 months ago by kaboroevich
  4

• About comparison with Original HiC matrix

  #31 opened a year ago by ahmedabbas811
  3

• A problem in the PositionalEncoding model code

  #42 opened 7 months ago by kir1to455
  3

• How to makr trans interaction contacts prediction?

  #40 opened 7 months ago by linfanxiao
  5

• Adding different ChIP-seq during the training phase ？

  #41 opened 7 months ago by kir1to455
  1

• insulation score

  #39 opened 8 months ago by wawpaopao
  5

• Can C.Origami predict the 3D chromatin with out CTCF ChIP-seq input data?

  #26 opened 2 years ago by YCMaCY
  4

• reproduce

  #38 opened 8 months ago by wawpaopao
  4

• Using CTCF chip-exo without input

  #37 opened 9 months ago by re2srm
  5

• Adding chromosome-wide prediction

  #24 opened 2 years ago by tanjimin
  6

• How to balance mcool files.

  #36 opened 10 months ago by 1944498970
  1

• Single-cell ATACseq adaptability

  #35 opened 10 months ago by archieandrews10
  1

• What method was used in the paper to convert the predictions into valid pairs?

  #34 opened 10 months ago by rebeccaronai
  1

• Request for evaluation code

  #29 opened a year ago by My-laniaKeA
  2

• Questions about performance comparison with deepC

  #30 opened a year ago by My-laniaKeA
  2

• `examples/prediction.sh` generates blank Hi-C image for chromosome 15

  #28 opened a year ago by My-laniaKeA
  2

• How to merge the predicted matrix and convert it back to valid pairs ？

  #27 opened a year ago by YCMaCY
  2

• Question about downscaling 10-kb matrix to 8192 bp resolution

  #25 opened 2 years ago by zhang-jiankun
  4

• Questions when I process the Hi-C data

  #23 opened 2 years ago by YCMaCY
  3

• Could HiC-data be replaced by HiC-data generated by other comformation capture experiments like HiChIP or ChIA-PET?

  #22 opened 2 years ago by Gemma-Zhang-326
  2

• Wrong file download link

  #18 opened 2 years ago by rozyangno
  1