Pinned Repositories
arvin
A package that ranks the SNPs using genomic, epigenomic and network based features.
CytoCommunity
The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
CytoTalk
A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
GLUER
OptiCon
A general framework for systematic and de novo identification of synergistic key regulators.
PIVOT
Platform for Interactive analysis and Visualization Of Transcriptomics data
scATAC-pro
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
SCRABBLE
Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE)
SCRABBLE_PAPER
spatial-bonemarrow-atlas
This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"
tanlabcode's Repositories
tanlabcode/spatial-bonemarrow-atlas
This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"
tanlabcode/CytoTalk
A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
tanlabcode/CytoCommunity
The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
tanlabcode/scATAC-pro
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
tanlabcode/GLUER
tanlabcode/OptiCon
A general framework for systematic and de novo identification of synergistic key regulators.
tanlabcode/SCRABBLE_PAPER
tanlabcode/SCRABBLE
Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE)
tanlabcode/PIVOT
Platform for Interactive analysis and Visualization Of Transcriptomics data
tanlabcode/arvin
A package that ranks the SNPs using genomic, epigenomic and network based features.
tanlabcode/CelloType
tanlabcode/CoSBI
tanlabcode/CSI-ANN
tanlabcode/FCOP
tanlabcode/IM-PET
tanlabcode/limacc
tanlabcode/M-module
tanlabcode/VisCello
Viscello for Visualization of Single Cell Data
tanlabcode/CODEXImageProcessingPackage
tanlabcode/KMT2Ar_Paper
tanlabcode/MAPLE.1.0
An R package for predicting gene activity level for single cell DNA Methylation data
tanlabcode/NBL_scMultiomics_Paper
Codes for preparing manuscript for studying high-risk NBL using longitudinal single-cell multiomics
tanlabcode/PANGEA
tanlabcode/rGMAP
tanlabcode/scATAC-pro_paper
The data and scripts used for scATAC-pro manuscript
tanlabcode/SINBAD
SINBAD
tanlabcode/SINBAD.0.1
Single Cell DNA Methylation Pipeline