tansey-lab/bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
Jupyter NotebookNOASSERTION
Issues
- 3
Randomly getting: ValueError: Expected parameter probs of distribution Categorical to satisfy the constraint Simplex()
#193 opened by bmlett - 7
How to adjust the plotting parameters?
#180 opened by bmlett - 6
Cannot have number of splits n_splits=15 greater than the number of samples: n_samples=2.
#174 opened by JihyunKiminGithub - 3
question about runtime
#148 opened by lllsssyyyy - 7
scikit-sparse issue when running deconvolution
#135 opened by andres-ocampo1 - 1
Benchmarking code not update
#141 opened by Cai-98 - 3
Getting marker expression from one specific spot and from one specific cell type
#132 opened by Jihua-Liu - 11
Running nextflow pipeline
#123 opened by jpark27 - 6
Out of memory error
#122 opened by shashwatsahay - 1
Python version conflicts in the Dockerfile
#138 opened by dustincys - 3
Deconvolved_marker_genes
#120 opened by Jihua-Liu - 2
Multi sample analysis
#108 opened by Jihua-Liu - 9
Error: from bayestme import deconvolution
#107 opened by Jihua-Liu - 2
10x Visium to AnnData
#98 opened by Jihua-Liu - 2
- 21
- 4
is the spatial expression command from latest version and the old version different?
#73 opened by parkjooyoung99 - 1
- 1
tissue_mask attribute becoming NaN
#67 opened by NKalavros - 2
filter_genes CLI: IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices
#68 opened by parkjooyoung99 - 13
- 0
- 10
`sample_mvn_from_precision` throws exception during Spatial Differential Expression sampling routine
#56 opened by jeffquinn-msk - 8
- 4
Plotting errors
#48 opened by JihyunKiminGithub - 3
Question regarding phenotype_selection
#52 opened by JihyunKiminGithub - 2
Command line errors
#38 opened by JihyunKiminGithub - 1
data load problem
#37 opened by JihyunKiminGithub