tessadgreen
ML for transcriptomics and immunology, with a focus on perturbation biology
KiraGen BioBoston, MA
Pinned Repositories
seurat-disk
Interfaces for HDF5-based Single Cell File Formats
scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
pertpy
Perturbation Analysis in the scverse ecosystem.
cellfate
DIALOGUE
DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
firstpackage
does something (I'm just imitating Jon here)
generic-expression-patterns
Distinguishing between generic and experiment-specific gene expression signals.
seurat-disk
Interfaces for HDF5-based Single Cell File Formats
tessadgreen.github.io
ThesisCode
Reproducibility code for thesis chapters not otherwise published
tessadgreen's Repositories
tessadgreen/cellfate
tessadgreen/DIALOGUE
DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
tessadgreen/firstpackage
does something (I'm just imitating Jon here)
tessadgreen/generic-expression-patterns
Distinguishing between generic and experiment-specific gene expression signals.
tessadgreen/seurat-disk
Interfaces for HDF5-based Single Cell File Formats
tessadgreen/tessadgreen.github.io
tessadgreen/ThesisCode
Reproducibility code for thesis chapters not otherwise published