sanderlab/scPerturb

Issues

• Error in .var for SrivatsanTrapnell2020_sciplex3.h5ad

  #27 opened a month ago by nrosed
  1

• Incorrect gene.annotation processing for sciPlex3

  #7 opened a month ago by FarzanT
  1

• Wrong 'perturbation' tag of data

  #6 opened a month ago by siduanmiao
  1

• Missing data of specific dataset

  #5 opened a month ago by siduanmiao
  1

• website out of date

  #26 opened 2 months ago by tessadgreen
  1

• Pre-Processing File for Norman et al.

  #24 opened 2 months ago by Hanxi-002
  1

• Difference between ncounts, read count, and UMI count

  #22 opened 2 months ago by zhan8855
  1

• Datasets deleted & Number of Cells missing

  #20 opened 2 months ago by ArturDev42
  2

• failure to reproduce significant perturbations in Norman et al.

  #25 opened 3 months ago by wconnell
  1

• JoungZhang2023 Controls

  #23 opened 4 months ago by FarzanT
  1

• I wonder if there is any look-up table of columns names explanation of each dataset provided?

  #21 opened 6 months ago by Yonggie
  3

• UI improvements

  #19 opened 8 months ago by stefanpeidli
  0

• TypeError: edist() got an unexpected keyword argument 'control'

  #18 opened 8 months ago by mksingh2104
  1

• Improve warning message if only one cell is perturbed in scperturbR

  #17 opened 8 months ago by stefanpeidli
  0

• Add ZapateroTape2023

  #16 opened 9 months ago by stefanpeidli
  0

• Add HeinWeissman2021

  #15 opened 9 months ago by stefanpeidli
  0

• Add ZapateroTape2023

  #14 opened 9 months ago by stefanpeidli
  0

• Prepare for upcoming Seurat v5 release

  #9 opened 9 months ago by Gesmira
  0

• Missing Data in AissaBenevolenskaya2021 Dataset

  #11 opened 9 months ago by lynn-1998
  1

• Parallelize e-dist calculation

  #12 opened 9 months ago by stefanpeidli
  1

• Make E-test handle dicts and lists for control group

  #13 opened 9 months ago by stefanpeidli
  1

• Docstring is incorrect: says edist parameter sample_correct is default True

  #10 opened 9 months ago by deto
  1

• https://www.scperturb.org/datasets throws "Couldn't fetch datasets."

  #2 opened 2 years ago by kaiu85
  4

• suggestion: provide a function for calculating E-distance

  #4 opened 2 years ago by AstreChen
  2

• Missing source code for data processing

  #3 opened 2 years ago by ececillie
  2

• scATAC datasets not downloading

  #1 opened 2 years ago by tessadgreen
  1