stefanpeidli
Single-cell nerd, interested in perturbation biology, cancer and immunology.
CharitéBerlin, Germany
Pinned Repositories
scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
anndata
Annotated data.
anndata
Annotated data.
bih-cluster
BIH Cluster Wiki
cellphonedb
Evo-L-Systems
Using evolutionary algorithms to generate natural 2D representations of artificial plants as Lindenmayer-Systems
GoNet
A students Project on GO
Huber-group-EMBL.github.io
Huber group public webpage
mousipy
Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
scvelo
RNA Velocity generalized through dynamical modeling
stefanpeidli's Repositories
stefanpeidli/mousipy
Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
stefanpeidli/GoNet
A students Project on GO
stefanpeidli/PanCov19_Hamster
stefanpeidli/anndata
Annotated data.
stefanpeidli/bih-cluster
BIH Cluster Wiki
stefanpeidli/cellphonedb
stefanpeidli/Evo-L-Systems
Using evolutionary algorithms to generate natural 2D representations of artificial plants as Lindenmayer-Systems
stefanpeidli/Huber-group-EMBL.github.io
Huber group public webpage
stefanpeidli/interactive_plotting
stefanpeidli/local-Biosphere-CO2-Model
A deterministic model for microscale biosphere-atmosphere carbon exchange
stefanpeidli/NatMeth_Code_scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
stefanpeidli/novosparc
stefanpeidli/pertpy-datasets
Dataset preparation for pertpy
stefanpeidli/powsimR
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
stefanpeidli/SaveMyThesis
stefanpeidli/scCRC_SLAMvelocity
stefanpeidli/scperturb_snakemake_example
Example repository for analyzing many datasets at once from scperturb.org using snakemake
stefanpeidli/scvelo
RNA Velocity using dynamical modeling
stefanpeidli/statannotations
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
stefanpeidli/stefanpeidli.github.io
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