Pinned Repositories
ancient_dna_pipeline
breadcrumbs
Reproducible Science Workflow
coco
Correlation conditional analysis.
COTOR
Fast, integrative colocalisation mapping with functional data
cv
Curriculum Vitae
fine_mapping_pipeline
Automates the usage of PAINTOR, and CAVIAR BF
NGaDNAP
Next Generation ancient DNA Pipeline
OtagoGalaxy
1000 genomes and Merriman Lab Galaxy
PyParallelShellJobs
Run commands in parallel on a local machine using python
txtEngine
theboocock's Repositories
theboocock/yeast_single_cell_post_mapping_analysis
theboocock/.vim
Vim configuration using vundle.
theboocock/ancient_bal_scripts
Scripts for generating figures for Boocock 2020
theboocock/annotation-nf
Annotate VCF with snpeff and bcsq
theboocock/bioconda-recipes
Conda recipes for the bioconda channel.
theboocock/CNVpytor
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
theboocock/COVID-NGS2
theboocock/finemapping_spreadsheets_single_cell
theboocock/gal_bal
theboocock/generic
theboocock/genomics_pipelines_nf_snakemake
theboocock/genomics_utils
theboocock/igv-reports
Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
theboocock/iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
theboocock/long_read_cnv
theboocock/monocle3
theboocock/nextstrain.org
The Nextstrain website
theboocock/pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
theboocock/planarian_chromosomal_assembly
theboocock/popgen_utilities
Population genetics utilities used for Boocock et al 2019
theboocock/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
theboocock/seurat
R toolkit for single cell genomics
theboocock/swabseq
UCLA Swabseq Software
theboocock/theboocock.github.io
theboocock/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python
theboocock/vartrix
Single-Cell Genotyping Tool
theboocock/WASP
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
theboocock/wi-gatk
The new GATK-based pipeline for wild isolate C. elegans strains
theboocock/yeast_annotations
theboocock/yeast_genome_ssearch36