Pinned Repositories
cbioportal
cBioPortal topic branches at The Hyve
fairspace
Fairspace provides a secure environment for managing research data.
glowing-bear
:bear: The open source cohort selection and analysis interface
OHDSI-Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
podium
Podium request portal for biobanks
RADAR-AndroidApplication
Application to be run on a Raspberry Pi3 to interact with the wearable devices
react-json-to-table
react-json-to-table
react-mutation-plot
A light weight adaptation React based mutation lollipop plot from cBioPortal frontend.
sas-convert
Simple SAS7BDAT to CSV conversion tool based on the Parso library.
transmart-core
Core components and documentation of the tranSMART platform. https://i2b2transmart.org/
The Hyve's Repositories
thehyve/dbxpModuleBase
Grails plugin that provides basic functionality for dbXP module plugins.
thehyve/Configuration-Files
ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
thehyve/dbxpModuleStorage
Grails Plugin for storing Metabolomics files in MongoDB
thehyve/GSCF-RClient
R client to connect to GSCF
thehyve/metabolomicsModule
Module for storing Metabolomics Data
thehyve/variant
A database for storing genotype-phenotype mappings from literature. This project was commissioned by TNO Quality of Life under the EU FP7 EURRECA project.
thehyve/arraycgh-galaxy
ArrayCGH tools ported from Chipster to Galaxy
thehyve/dazzle
thehyve/dbxpBase
Base domain model for dbXP / study capture framework
thehyve/Groc-1
Beautiful documentation of your groovy sources
thehyve/jbrowse-plugin
thehyve/openphacts-java-client
OpenPHACTS API client library for Java
thehyve/PathVisioRPC
PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway statistics, query pathways to obtain list of participants and exports results in various image formats. Since most major programming languages have an XML-RPC implementation, this application enables users to access PathVisio functionality without leaving the programming environment with which they are familiar.
thehyve/puppet-transmartApp
Puppet module to automatically install the TransmartApp
thehyve/tMDataLoader
new Groovy-based tranSMART ETL
thehyve/transmartApp-DB
Database schema and database dumps for tranSMART application