Pinned Repositories
cbioportal
cBioPortal topic branches at The Hyve
fairspace
Fairspace provides a secure environment for managing research data.
glowing-bear
:bear: The open source cohort selection and analysis interface
OHDSI-Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
podium
Podium request portal for biobanks
RADAR-AndroidApplication
Application to be run on a Raspberry Pi3 to interact with the wearable devices
react-json-to-table
react-json-to-table
react-mutation-plot
A light weight adaptation React based mutation lollipop plot from cBioPortal frontend.
sas-convert
Simple SAS7BDAT to CSV conversion tool based on the Parso library.
transmart-core
Core components and documentation of the tranSMART platform. https://i2b2transmart.org/
The Hyve's Repositories
thehyve/fairspace
Fairspace provides a secure environment for managing research data.
thehyve/cbioportal
cBioPortal topic branches at The Hyve
thehyve/react-gtex-viz
React components for visualisations from the GTEx web portal
thehyve/whereabouts
Data warehouse Inventory Management System
thehyve/amazing-planning-generator
Sharks gotta swim. Bats gotta fly. And I'll need a weekly planning till I die.
thehyve/biocypher
A unifying framework for biomedical research knowledge graphs
thehyve/biocypher-cbioportal
a cBioPortal adapter for the BioCypher framework
thehyve/BioCypher-OT
thehyve/fairspace-jupyter
Code for connecting JupyterHub to Fairspace
thehyve/ot-ui-apps
thehyve/Capr-Enhancements
Cohort definition Application Programming in R fork for PHEMS project
thehyve/Capr-PHEMS
Cohort definition Application Programming in R fork for PHEMS project
thehyve/fairspace-docs
Public Fairspace documentation
thehyve/fairspace-keycloak
Helm chart for installing Keycloak for Fairspace
thehyve/OHDSI-WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
thehyve/cbioportal-core
Externalized cBioPortal Core
thehyve/cbioportal-frontend
React Frontend of cBioPortal :tada:
thehyve/genetics-colocalisation
Colocalisation pipeline for Open Targets Genetics
thehyve/genetics-finemapping
Fine-mapping pipeline for Open Targets Genetics
thehyve/genetics-sumstat-data
Workflows for processing summary statistics files for Open Targets Genetics
thehyve/genome-nexus-vep
thehyve/gentropy
Open Targets python framework for post-GWAS analysis
thehyve/ManagementPortal
Custom client branches for Management Portal
thehyve/omop-cdm
SQLAlchemy definition of the OMOP CDM
thehyve/ot-ai-api
thehyve/platform-api
GraphQL and Rest API rewrite of the current Open Targets platform API
thehyve/platform-tractability_pipeline_v2
Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
thehyve/radar-data-dashboard-backend
RADAR-base Data Dashboard backend
thehyve/radar-sample-scripts
Sample scripts and app to access RADAR-base entities and Minio data from the REST API and Minio SDK
thehyve/single-cell-explorer
Hosted version of cellxgene