Pinned Repositories
cbioportal
cBioPortal topic branches at The Hyve
fairspace
Fairspace provides a secure environment for managing research data.
glowing-bear
:bear: The open source cohort selection and analysis interface
OHDSI-Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
podium
Podium request portal for biobanks
RADAR-AndroidApplication
Application to be run on a Raspberry Pi3 to interact with the wearable devices
react-json-to-table
react-json-to-table
react-mutation-plot
A light weight adaptation React based mutation lollipop plot from cBioPortal frontend.
sas-convert
Simple SAS7BDAT to CSV conversion tool based on the Parso library.
transmart-core
Core components and documentation of the tranSMART platform. https://i2b2transmart.org/
The Hyve's Repositories
thehyve/react-json-to-table
react-json-to-table
thehyve/glowing-bear-docker
Docker scripts for Glowing Bear
thehyve/dntp-portal
Request portal for Dutch pathology labs.
thehyve/OHDSI-ETL-Synthea
Conversion from Synthea CSV to OMOP CDM
thehyve/tr_idm
A terraform config for provisioning of Idm
thehyve/food4me-webservice
thehyve/OHDSI-Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
thehyve/podium-registry
BBMRI Podium Microservices Registry
thehyve/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
thehyve/Cipherome_UKB.github.io
thehyve/ckanext-extractor
A full text and metadata extractor for CKAN
thehyve/ckanext-ldap
CKAN plugin to provide LDAP authentication
thehyve/CohortDiagnostics
An R package for performing various cohort diagnostics.
thehyve/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
thehyve/fairspace-keycloak-configuration
Repository containing scripts for configuration of Fairspace Keycloak
thehyve/fairspace-metadata-testdata
Testdata generator for metadata in Fairspace
thehyve/Fractal.js
[Front-end] A scalable open-source service for platform-independent interactive visual analysis of biomedical data
thehyve/Fractalis
[Back-end] A scalable open-source service for platform-independent interactive visual analysis of biomedical data
thehyve/ohdsi-comparison-study
Test study for cohort level effect estimation
thehyve/opentargets_data_pipeline
Topic branches for the Open Targets data processing pipeline
thehyve/ot_covid19
Centralise publicly available datasets in order to build a Virus – Host Target Knowledgebase for Drug Target Selection
thehyve/ot_covid19-frontend
COVID-19 dataset frontend
thehyve/otg-data-sample
Small data sample to be used to test data loading and application.
thehyve/puppet-3scale-proxy
Puppet module to configure 3scale proxy.
thehyve/puppet-logrotate
Puppet logrotate module
thehyve/puppet-ssl_proxy
Provide an SSL proxy with automated certificate renewal using Let's Encrypt
thehyve/RADAR-aRMT-protocols
aRMT App protocols for questionnaire delivery
thehyve/RADAR-Schemas
Catalog of the schemas for RADAR-CNS
thehyve/ShinyDeploy
Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.
thehyve/wr_scanreport
Classes for reading a White Rabbit scan report