Pinned Repositories
cbioportal
cBioPortal topic branches at The Hyve
fairspace
Fairspace provides a secure environment for managing research data.
glowing-bear
:bear: The open source cohort selection and analysis interface
OHDSI-Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
podium
Podium request portal for biobanks
RADAR-AndroidApplication
Application to be run on a Raspberry Pi3 to interact with the wearable devices
react-json-to-table
react-json-to-table
react-mutation-plot
A light weight adaptation React based mutation lollipop plot from cBioPortal frontend.
sas-convert
Simple SAS7BDAT to CSV conversion tool based on the Parso library.
transmart-core
Core components and documentation of the tranSMART platform. https://i2b2transmart.org/
The Hyve's Repositories
thehyve/glowing-bear
:bear: The open source cohort selection and analysis interface
thehyve/sas-convert
Simple SAS7BDAT to CSV conversion tool based on the Parso library.
thehyve/podium
Podium request portal for biobanks
thehyve/davfs2
Mount a WebDAV resource as a regular file system. This repository is a copy of the original repository with project specific patches in the fairspace branch.
thehyve/transmart-api-client-py
🐍 Python client for tranSMART Glowing Bear
thehyve/ohdsi-etl-abucasis
Transformation scripts for Inclivia's Abucasis EHR data | BigData@Heart consortium
thehyve/python_csr2transmart
Scripts for converting CSR data to TranSMART
thehyve/transmart-hyper-dicer
Export a subset of data from a TranSMART instance based on a query, and upload them to a different (empty) TranSMART instance using transmart-copy. Short for TranSMART hypercube dicer.
thehyve/ohdsi-etl-prias
Transformation from PRIAS to the OMOP CDM
thehyve/pmc-conversion
Data extraction, transformation and loading pipeline for the Princess Maxima Center
thehyve/BlueSteel
An Avro encoding/decoding library for Swift.
thehyve/OHDSI-WebAPI
[Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
thehyve/metatree
Copy of https://github.com/thehyve/fairspace with customized changes.
thehyve/ohdsi-omop-pioneer
thehyve/RADAR-AndroidApplication
Application to be run on a Raspberry Pi3 to interact with the wearable devices
thehyve/cellenics-releases
thehyve/datahub-study-curation-tools
Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
thehyve/fairspace-build-scripts
A set of build scripts used in all Fairspace repositories
thehyve/genetics-api
thehyve/genetics-app
Open Targets Genetics Portal UI
thehyve/OHDSI-Broadsea
Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
thehyve/OHDSI-Usagi
Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
thehyve/opentargets_platform_app
Experimental React app
thehyve/opentargets_platform_etl_backend
thehyve/opentargets_rest_api
Flask-based Rest API for OpenTargets CoreDB Data
thehyve/password-encoder
Simple command line password encoder tool
thehyve/pops_gene_features
thehyve/qsp-dev-portal
QSP dev portal based on AWS API Gateway
thehyve/react-d3-interactome
thehyve/vulnerability-check-action
Github action that checks your project for vulnerabilities