tillahoffmann
Building network models at @HarvardChanSchool with a focus on open and reproducible science. Formerly @imperial, @spotify.
Harvard T.H. Chan School of Public HealthBoston, MA
Pinned Repositories
shedding-hub
Data and statistical models for biomarker shedding.
asymmetric_kde
Density estimation using asymmetric kernels.
localscope
Restrict the scope of functions for reproducible code execution and peace of mind.
nonpoisson-dynamics
obsidian-file-include
obsidian-jupyter
shedding
Uncertainties surrounding the concentration of viral RNA fragments in the faeces of individuals infected with SARS-CoV-2 poses a major challenge for wastewater-based surveillance of Covid-19. This repository serves to collate data from quantitative studies on RNA load in faecal samples to constrain the shedding distribution.
time_series
wastewater-catchment-areas
7,537 wastewater catchment areas in the Great Britain covering more than 95% of the population.
tillahoffmann's Repositories
tillahoffmann/summaries2
tillahoffmann/mininf
mininf is a minimal library to infer the parameters of probabilistic programs and make predictions.
tillahoffmann/openformat
Openformat: making data usable.
tillahoffmann/obsidian-releases
tillahoffmann/action-python-deps
tillahoffmann/summaries
Comparison of summary statistic selection methods with a unifying perspective.
tillahoffmann/precompiled-cmdstan
Precompiled cmdstan for use in Read the Docs and elsewhere.
tillahoffmann/datatrail-python
tillahoffmann/slides
Create stunning presentations using markdown powered by reveal.js.
tillahoffmann/obsidian-jupyter
tillahoffmann/testcontainers-python
tillahoffmann/readme_renderer
Safely render long_description/README files in Warehouse
tillahoffmann/vbzero
Minimal variational Bayes in torch.
tillahoffmann/template
A simple template for reproducible research.
tillahoffmann/sphinx-stan
Sphinx domain for Stan, the probabilistic programming language
tillahoffmann/gptools
Gaussian processes on graphs and lattices in Stan and pytorch.
tillahoffmann/react-pages
Experimental repository for deploying a React app to GitHub Pages using GitHub Actions.
tillahoffmann/pandoc-slides-archive
tillahoffmann/idxhound
🐶 Track indices across one or more numpy selections.
tillahoffmann/doit_interface
A functional interface for creating doit tasks
tillahoffmann/httpstan
HTTP interface to Stan, a package for Bayesian inference.
tillahoffmann/net-summary-selection
tillahoffmann/version-wizard
tillahoffmann/DataTrail
The re-organized DataTrail curriculum https://www.datatrail.org/
tillahoffmann/pythonflow
Dataflow programming for python.
tillahoffmann/doit
task management & automation tool
tillahoffmann/cython
The most widely used Python to C compiler
tillahoffmann/torch-disttools
Tools for handling pytorch distributions.
tillahoffmann/pytorch_geometric
Graph Neural Network Library for PyTorch
tillahoffmann/coaloracle
Repository for simulated genetic data presented by Nunes and Balding (2010).